Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g022980 Solanum pennellii HOM05D006367 ORTHO05D007942 0.0e+00 1113.6 538 100.0
Solyc04g051610.3 Solanum lycopersicum HOM05D006367 ORTHO05D007942 1.1e-306 1055.8 538 95.5
Nitab4.5_0000184g0160 Nicotiana tabacum HOM05D006367 ORTHO05D007942 2.9e-259 898.3 555 80.9
Nitab4.5_0009050g0050 Nicotiana tabacum HOM05D006367 ORTHO05D007942 1.4e-258 896.0 542 82.7
CAN.G1044.2 Capsicum annuum HOM05D006367 ORTHO05D007942 4.7e-249 864.4 540 80.2
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 2.1e-217 759.2 489 73.6
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 6.2e-217 757.7 507 71.2
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 5.8e-215 751.1 526 68.4
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 7.5e-215 750.7 536 68.3
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 8.3e-214 747.3 530 67.7
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 1.4e-213 746.5 525 69.0
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 3.2e-213 745.3 457 76.8
Atru.chr7.1822 Acer truncatum HOM05D006367 ORTHO05D007942 3.5e-212 741.9 530 68.3
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 2.3e-211 739.2 456 73.9
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 5.1e-211 738.0 527 67.7
Aqoxy6G00434 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 2.5e-210 735.7 528 66.9
Oeu028362.1 Olea europaea HOM05D006367 ORTHO05D007942 4.3e-210 734.9 469 73.6
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 4.3e-210 734.9 465 74.2
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 5.6e-210 734.6 470 73.0
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 9.5e-210 733.8 465 74.0
PSO675G5206 Papaver somniferum HOM05D006367 ORTHO05D007942 1.1e-208 730.3 536 66.2
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 2.0e-207 726.1 458 73.1
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 2.0e-207 726.1 504 69.4
Ciclev10025312m.g Citrus clementina HOM05D006367 ORTHO05D007942 9.9e-207 723.8 456 73.7
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 1.7e-206 723.0 456 74.3
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 2.9e-206 722.2 535 67.1
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 2.9e-206 722.2 472 72.2
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 2.9e-206 722.2 465 73.5
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.7e-206 721.8 476 72.1
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 4.9e-206 721.5 456 73.7
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 6.4e-206 721.1 455 73.4
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 8.3e-206 720.7 487 69.6
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.9e-205 719.5 462 73.4
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 5.4e-205 718.0 490 70.0
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 1.2e-204 716.8 512 68.4
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 1.2e-204 716.8 456 75.0
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 2.1e-204 716.1 496 66.9
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 3.5e-204 715.3 496 66.7
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 3.5e-204 715.3 466 73.4
BraA04t17280Z Brassica rapa HOM05D006367 ORTHO05D007942 1.0e-203 713.8 492 69.5
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 1.0e-203 713.8 462 72.1
Sc14g0009250 Simmondsia chinensis HOM05D006367 ORTHO05D007942 1.0e-203 713.8 479 71.4
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 1.3e-203 713.4 490 70.0
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 1.3e-203 713.4 490 70.0
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 1.3e-203 713.4 472 71.4
A04p16450 Brassica napus HOM05D006367 ORTHO05D007942 3.0e-203 712.2 492 69.5
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 8.6e-203 710.7 463 73.0
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 1.1e-202 710.3 483 70.6
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 1.9e-202 709.5 466 72.3
Dinv42673 Davidia involucrata HOM05D006367 ORTHO05D007942 4.3e-202 708.4 431 77.0
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 1.2e-201 706.8 465 70.1
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.4e-200 703.4 446 73.8
ECA240G4594 Erigeron canadensis HOM05D006367 ORTHO05D007942 1.8e-200 703.0 454 73.1
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 1.8e-200 703.0 474 70.7
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 2.4e-200 702.6 464 71.1
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 8.9e-200 700.7 510 66.9
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 1.5e-199 699.9 463 71.3
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 2.0e-199 699.5 466 70.4
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 2.6e-199 699.1 461 71.6
HanXRQChr03g0078741 Helianthus annuus HOM05D006367 ORTHO05D007942 5.8e-199 698.0 460 72.0
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 1.3e-198 696.8 463 72.1
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 2.2e-198 696.0 469 70.4
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 3.8e-198 695.3 515 66.6
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 2.1e-196 689.5 425 75.5
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 2.5e-194 682.6 434 74.0
DCAR_011462 Daucus carota HOM05D006367 ORTHO05D007942 9.6e-194 680.6 455 71.0
Psat7g050440 Pisum sativum HOM05D006367 ORTHO05D007942 6.2e-193 677.9 458 67.7
Nitab4.5_0005102g0010 Nicotiana tabacum HOM05D006367 ORTHO05D007942 8.1e-193 677.6 567 64.2
Lsat_1_v5_gn_5_44981 Lactuca sativa HOM05D006367 ORTHO05D007942 3.1e-192 675.6 460 69.6
Lalb_Chr07g0184731 Lupinus albus HOM05D006367 ORTHO05D007942 3.1e-192 675.6 456 69.1
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 2.0e-191 672.9 435 73.6
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 7.6e-191 671.0 458 70.3
Lj4g0025161 Lotus japonicus HOM05D006367 ORTHO05D007942 6.4e-190 667.9 463 67.4
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 8.4e-190 667.5 460 66.7
MELO3C034581.2 Cucumis melo HOM05D006367 ORTHO05D007942 1.4e-189 666.8 530 63.0
ClCG02G000950 Citrullus lanatus HOM05D006367 ORTHO05D007942 1.9e-189 666.4 458 69.4
Glyma.05G184900 Glycine max HOM05D006367 ORTHO05D007942 1.9e-189 666.4 456 68.2
PGSC0003DMG400023291 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.9e-189 666.4 362 90.6
TPR.G2178 Trifolium pratense HOM05D006367 ORTHO05D007942 1.9e-189 666.4 456 67.3
Ca_17687_v3 Cicer arietinum L. HOM05D006367 ORTHO05D007942 1.2e-188 663.7 456 67.5
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 3.0e-187 659.1 486 64.2
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 1.5e-186 656.8 423 73.0
Medtr8g092050 Medicago truncatula HOM05D006367 ORTHO05D007942 2.5e-186 656.0 466 66.3
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 3.3e-186 655.6 425 72.0
CsaV3_2G017740 Cucumis sativus L. HOM05D006367 ORTHO05D007942 3.3e-186 655.6 461 69.0
Aa31LG7G14760 Aethionema arabicum HOM05D006367 ORTHO05D007942 9.6e-186 654.1 465 68.2
MELO3C020965.2 Cucumis melo HOM05D006367 ORTHO05D007942 9.6e-186 654.1 530 62.3
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 2.1e-185 652.9 419 73.0
CARHR112850 Cardamine hirsuta HOM05D006367 ORTHO05D007942 1.2e-183 647.1 457 67.6
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.1e-181 640.6 505 59.0
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.4e-181 640.2 436 67.0
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 3.2e-181 639.0 421 72.2
Sed0027379 Sechium edule HOM05D006367 ORTHO05D007942 5.6e-178 628.2 418 72.2
Actinidia05379 Actinidia chinensis HOM05D006367 ORTHO05D007942 2.1e-177 626.3 425 69.6
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 4.8e-177 625.2 462 62.3
PGSC0003DMG400020963 Solanum tuberosum HOM05D006367 ORTHO05D007942 4.0e-176 622.1 425 75.1
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 1.0e-174 617.5 464 66.6
Peaxi162Scf00106g01216 Petunia axillaris HOM05D006367 ORTHO05D007942 1.5e-162 577.0 495 63.4
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 3.1e-160 569.3 346 76.6
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 3.7e-145 519.2 462 55.6
SMO367G0721 Selaginella moellendorffii HOM05D006367 ORTHO05D007942 1.1e-141 507.7 458 53.3
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 3.2e-141 506.1 445 54.6
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 2.2e-134 483.4 502 48.8
Phvul.002G265800 Phaseolus vulgaris HOM05D006367 ORTHO05D007942 4.7e-132 475.7 351 64.4
PGSC0003DMG400031203 Solanum tuberosum HOM05D006367 ORTHO05D007942 7.5e-114 415.2 204 95.1
Cre09.g388060 Chlamydomonas reinhardtii HOM05D006367 ORTHO05D007942 9.5e-101 371.7 474 43.0
Eucgr.L02754 Eucalyptus grandis HOM05D006367 ORTHO05D007942 2.1e-95 354.0 299 59.2
MCO11G553 Micromonas commoda HOM05D006367 ORTHO05D007942 6.2e-92 342.4 531 38.4
AagrBONN_evm.TU.Sc2ySwM_344.1355 Anthoceros agrestis HOM05D006367 ORTHO05D007942 2.3e-91 340.5 446 40.6
unitig_899.g14612 Utricularia gibba HOM05D006367 ORTHO05D007942 4.3e-85 319.7 235 66.8
Glyma.08G142950 Glycine max HOM05D006367 ORTHO05D007942 1.9e-80 304.3 183 74.9
PRCOL_00006729 Prasinoderma coloniale HOM05D006367 ORTHO05D007942 3.6e-76 290.0 496 35.5
Hma1.2p1_0696F.1_g204650 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 2.6e-74 283.9 204 67.6
PGSC0003DMG400004546 Solanum tuberosum HOM05D006367 ORTHO05D007942 3.0e-70 270.4 425 42.6
HPP92_027992 Vanilla planifolia HOM05D006367 ORTHO05D007942 2.1e-68 264.2 271 51.7
Aqoxy4G01385 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 1.1e-67 261.9 151 77.5
Aqoxy4G01201 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 2.0e-66 257.7 151 76.2
Glyma.08G142900 Glycine max HOM05D006367 ORTHO05D007942 4.6e-63 246.5 222 55.9
GSVIVG01022252001 Vitis vinifera HOM05D006367 ORTHO05D007942 9.7e-37 159.1 184 47.8
vmacro12891 Vaccinium macrocarpon HOM05D006367 ORTHO05D007942 6.3e-20 103.2 108 50.0
Haze_08452 Corylus avellana HOM05D014029 ORTHO05D044818 5.9e-18 96.7 73 61.6
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 1.6e-15 88.6 90 50.0
Hma1.2p1_0696F.1_g204670 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.3e-12 79.0 46 71.7
CARHR293120 Cardamine hirsuta HOM05D006367 ORTHO05D007942 3.7e-12 77.4 91 45.1
Haze_24492 Corylus avellana HOM05D001078 ORTHO05D000927 4.1e-11 73.9 53 73.6
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 3.5e-10 70.9 270 23.0
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 3.5e-10 70.9 183 24.0
CARHR034070 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.2e-09 68.2 120 35.8
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 4.2e-08 63.9 137 25.5


User provided reference genes

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