Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 6359.6 3208 100.0
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 5212.5 2664 99.0
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 4674.8 3111 79.1
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 3878.9 3273 63.0
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3732.6 3279 61.6
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3712.5 3235 61.5
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3687.9 3288 60.3
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 3540.4 3256 59.4
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 3520.7 3282 58.5
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 3514.2 3288 58.0
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 3501.4 3265 58.1
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 3498.4 3288 57.9
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 3470.2 3275 58.0
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3467.9 3371 57.1
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3464.1 3263 58.7
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3444.1 3254 58.1
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3437.5 3255 58.4
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3435.6 3257 58.1
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3420.6 3302 57.1
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3410.5 3259 57.6
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3407.1 3281 57.5
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3403.6 3257 57.1
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 3402.1 3264 57.0
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3400.1 3250 57.3
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 3398.6 3292 57.3
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3397.8 3277 57.6
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3396.7 3264 56.9
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3393.2 3264 57.0
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3386.3 3264 56.8
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3370.1 3264 56.6
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3368.2 3267 56.6
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 3365.9 3309 56.5
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3355.8 3276 56.3
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 3300.8 3275 55.9
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3296.9 3233 56.0
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3295.4 3265 56.0
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 3290.7 3269 56.1
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3281.1 3294 55.3
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 3278.4 3280 55.5
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3271.5 3288 55.2
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3267.6 3266 55.0
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3264.6 3286 55.1
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 3254.5 3278 55.3
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3244.9 3282 54.8
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3236.8 3108 56.5
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3216.8 3260 54.4
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3205.6 3285 54.1
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3187.1 3288 53.8
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3182.5 3271 54.2
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3167.9 3275 54.9
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3150.9 3291 53.1
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3136.3 3299 53.1
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3135.9 3269 53.3
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3127.4 3284 53.1
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3123.6 3247 54.7
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3117.4 2900 58.3
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3103.5 3296 52.6
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 3093.1 3258 52.9
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 3089.7 3087 55.8
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 3082.0 3262 52.9
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3074.6 3248 52.6
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3071.6 3245 52.8
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 3070.0 3246 52.6
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 3069.6 3280 52.8
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 3068.1 3257 52.6
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 3067.7 3263 52.7
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 3064.2 3257 52.4
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 3056.9 3258 52.6
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 3054.2 3260 52.3
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3029.6 3276 51.4
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 3022.6 3321 51.5
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 2978.7 3270 51.5
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2950.2 2992 55.0
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2920.6 2434 63.3
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 2869.0 3026 53.0
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2822.7 1703 84.1
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2670.2 1501 91.5
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2649.0 3254 47.9
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 2570.0 1463 90.1
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2558.1 2025 66.4
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2539.6 3265 46.0
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2357.4 2449 52.6
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2308.5 2581 51.3
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2207.6 1593 71.9
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2075.4 1989 58.0
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2054.6 1694 63.8
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2051.9 3344 38.9
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1958.0 2413 46.7
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1917.5 2439 45.7
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1916.0 1275 77.5
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1902.9 1790 59.4
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1884.0 2827 41.6
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1874.4 3313 38.3
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1840.1 1444 67.8
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1829.7 3308 37.1
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1704.1 3516 34.7
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1455.7 1004 74.4
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1354.0 2179 40.5
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 0.0e+00 1283.1 889 74.9
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1222.6 1562 47.5
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1222.2 1000 65.5
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1198.3 1252 52.6
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1154.8 839 69.8
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1149.8 976 62.2
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1101.7 835 67.4
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1079.7 1534 42.0
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 6.1e-296 1022.7 975 58.3
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.0e-295 1020.4 851 62.3
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 8.3e-293 1012.3 1136 52.3
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 3.0e-282 977.2 3355 27.8
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 2.5e-257 894.4 1501 39.4
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.3e-248 865.5 440 98.6
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 8.1e-248 862.8 1495 38.1
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.8e-234 818.5 903 51.3
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 5.9e-222 776.9 744 55.9
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 2.9e-221 774.6 450 86.9
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 1.8e-202 712.2 408 88.0
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 1.4e-183 649.4 412 80.6
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 7.8e-142 510.8 655 44.7
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 7.3e-140 504.2 270 92.2
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 1.1e-135 490.3 803 39.2
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 3.2e-135 488.8 855 37.2
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 1.5e-132 479.9 814 38.6
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 3.4e-129 468.8 933 35.9
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 2.3e-125 456.1 850 35.6
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 8.7e-125 454.1 326 69.9
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 8.7e-117 427.6 798 35.8
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 5.1e-109 401.7 443 51.0
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.1e-108 400.6 250 78.0
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 1.8e-101 376.7 532 44.7
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 5.7e-100 371.7 302 64.6
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 5.9e-97 361.7 563 43.7
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 3.2e-95 355.9 653 36.3
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 5.3e-90 338.6 327 58.4
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 1.2e-86 327.4 244 66.0
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 3.9e-85 322.4 904 30.2
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 7.0e-82 311.6 217 74.7
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 8.5e-80 304.7 245 62.0
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 3.2e-79 302.8 454 39.9
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 4.2e-79 302.4 307 55.4
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 2.2e-75 290.0 345 47.2
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 1.3e-72 280.8 823 28.1
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 5.2e-69 268.9 341 49.0
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 1.2e-65 257.7 328 46.0
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 8.0e-62 245.0 963 25.8
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 4.1e-58 232.6 683 26.9
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 4.5e-57 229.2 791 25.3
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 3.3e-55 223.0 155 71.0
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 9.5e-55 221.5 117 93.2
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 2.0e-52 213.8 415 34.7
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 6.8e-45 188.7 707 26.7
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 8.9e-45 188.3 394 33.0
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.2e-42 179.9 93 92.5
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 9.2e-42 178.3 194 49.5
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 1.3e-32 147.9 115 67.0
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 6.4e-27 129.0 117 59.0
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 4.7e-22 112.8 81 76.5
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 8.1e-22 112.1 146 47.9
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 1.8e-21 110.9 82 69.5
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 2.4e-21 110.5 150 46.0
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 5.8e-20 105.9 97 57.7
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 1.3e-19 104.8 110 52.7
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 1.1e-18 101.7 70 74.3
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 5.4e-18 99.4 91 58.2
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 9.0e-13 82.0 64 59.4
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 4.5e-12 79.7 148 34.5
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 5.8e-12 79.3 58 65.5
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 3.2e-10 73.6 59 67.8
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 9.3e-10 72.0 58 60.3
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 1.3e-08 68.2 58 63.8
Lsat_1_v5_gn_5_173760 Lactuca sativa HOM05D000298 ORTHO05D233122 3.9e-08 66.6 68 58.8
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 6.7e-08 65.9 44 72.7


User provided reference genes

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