Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 0.0e+00 1303.1 645 100.0
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 0.0e+00 1294.3 645 99.4
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 1.1e-310 1069.3 631 81.9
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.9e-252 875.9 535 82.4
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 5.4e-252 874.4 534 82.2
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 7.6e-222 774.2 658 59.7
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 3.8e-221 771.9 641 60.1
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 1.2e-219 766.9 643 59.7
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 1.6e-216 756.5 641 59.0
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 6.9e-215 751.1 634 60.3
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 1.5e-214 750.0 632 59.8
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 8.5e-213 744.2 640 58.8
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 5.5e-212 741.5 644 57.3
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 2.3e-210 736.1 645 58.4
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.3e-210 736.1 645 58.4
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 6.7e-210 734.6 635 58.6
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 8.7e-210 734.2 641 58.3
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 8.7e-210 734.2 647 58.3
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 7.4e-209 731.1 637 57.5
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 6.3e-208 728.0 644 58.2
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 1.1e-207 727.2 641 57.6
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 3.1e-207 725.7 631 57.4
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 7.7e-206 721.1 643 57.1
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 1.3e-205 720.3 640 56.4
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 6.5e-205 718.0 624 57.1
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 1.4e-204 716.8 635 57.5
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 3.2e-204 715.7 635 58.4
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 9.4e-204 714.1 637 57.3
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 1.1e-201 707.2 625 57.1
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 1.5e-201 706.8 624 56.6
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 2.6e-201 706.1 640 55.3
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 4.4e-201 705.3 639 55.6
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 9.7e-201 704.1 642 56.4
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 2.8e-200 702.6 637 56.0
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 6.3e-200 701.4 647 54.4
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 8.2e-200 701.0 633 56.1
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 8.2e-200 701.0 633 56.2
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 1.1e-199 700.7 442 75.8
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 1.4e-199 700.3 637 57.0
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 1.8e-199 699.9 506 67.2
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 1.0e-197 694.1 642 55.8
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 6.5e-197 691.4 633 56.2
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 4.2e-196 688.7 513 65.9
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 1.2e-195 687.2 631 54.2
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 2.1e-195 686.4 637 53.7
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 2.3e-194 682.9 633 55.6
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 5.2e-194 681.8 642 55.6
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 6.7e-194 681.4 642 54.4
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 7.4e-193 677.9 642 54.5
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 2.2e-192 676.4 640 55.0
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 4.1e-191 672.2 636 54.7
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 4.1e-191 672.2 627 54.5
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 5.9e-190 668.3 638 53.1
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 1.7e-189 666.8 636 53.8
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 3.8e-189 665.6 628 54.3
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 8.5e-189 664.5 629 53.3
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 1.5e-188 663.7 614 55.4
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 3.2e-188 662.5 508 63.8
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 4.2e-188 662.1 508 63.8
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 5.5e-188 661.8 541 61.0
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 7.2e-188 661.4 628 54.1
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 8.0e-187 657.9 643 53.0
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 3.0e-186 656.0 644 53.7
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 1.2e-185 654.1 629 52.1
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 4.4e-185 652.1 623 55.7
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 2.2e-184 649.8 635 52.8
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 2.8e-184 649.4 634 52.4
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 6.3e-184 648.3 647 52.4
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 6.3e-184 648.3 641 52.9
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 1.4e-183 647.1 634 52.7
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 1.8e-183 646.7 647 52.4
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 1.8e-183 646.7 339 92.3
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 4.1e-183 645.6 509 63.5
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 4.5e-182 642.1 639 52.7
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 7.7e-182 641.3 446 68.2
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 1.3e-181 640.6 646 51.5
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 2.9e-181 639.4 654 52.0
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 5.5e-180 635.2 634 51.6
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 1.2e-179 634.0 647 52.7
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 2.1e-179 633.3 552 58.5
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 2.1e-179 633.3 618 52.4
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 1.2e-177 627.5 544 59.9
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.0e-177 626.7 704 49.9
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 4.1e-175 619.0 671 50.8
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 2.7e-174 616.3 587 53.0
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 3.5e-166 589.3 391 72.6
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 6.6e-165 585.1 459 60.3
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 1.1e-164 584.3 517 58.2
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 9.5e-164 581.3 563 54.0
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 9.5e-164 581.3 391 71.9
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 9.8e-161 571.2 404 67.6
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 3.7e-160 569.3 388 69.8
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 1.1e-159 567.8 396 68.4
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 1.1e-159 567.8 396 68.4
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 2.1e-155 553.5 637 46.8
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 2.7e-150 536.6 388 65.5
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 2.7e-150 536.6 554 50.4
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 2.3e-149 533.5 454 59.7
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.5e-145 520.8 588 49.1
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 1.5e-145 520.8 258 98.4
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 1.0e-141 508.1 510 52.0
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 5.1e-141 505.8 536 46.8
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.2e-137 494.6 488 52.5
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 1.9e-135 487.3 510 51.8
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 2.7e-134 483.4 257 96.5
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 5.1e-133 479.2 401 60.3
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 2.6e-129 466.8 454 52.2
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 4.2e-127 459.5 490 50.8
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 3.3e-124 449.9 489 48.7
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 4.0e-122 443.0 468 49.6
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 3.9e-117 426.4 452 50.2
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 5.1e-117 426.0 514 44.0
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 2.4e-114 417.2 269 74.7
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 9.3e-111 405.2 362 54.1
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 1.2e-102 378.3 485 39.8
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.2e-96 357.5 491 42.2
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 7.2e-95 352.4 345 52.2
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 4.1e-90 336.7 306 54.6
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.3e-88 331.6 276 58.0
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 5.7e-84 316.2 387 43.4
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 4.2e-71 273.5 191 65.4
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 5.5e-71 273.1 481 34.9
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.5e-63 248.4 124 88.7
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.5e-63 247.7 124 89.5
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 1.8e-61 241.5 159 69.8
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 4.5e-49 200.3 132 68.9
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 2.9e-48 197.6 195 47.7
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 7.8e-41 172.9 250 42.8
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 6.4e-35 153.3 130 60.8
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 3.2e-34 151.0 126 57.9
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 4.6e-33 147.1 217 39.2
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 2.1e-30 138.3 124 56.5
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 1.3e-27 129.0 224 36.6
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 3.4e-20 104.4 127 46.5
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 1.4e-18 99.0 91 54.9
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 4.7e-14 84.0 151 35.1
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 7.1e-10 70.1 68 47.1


User provided reference genes

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