Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 2.2e-283 978.4 534 100.0
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 1.4e-242 842.8 502 91.6
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 5.2e-208 728.0 533 79.4
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 2.5e-186 656.0 555 69.9
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 9.5e-186 654.1 540 70.4
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 2.1e-164 583.2 543 66.3
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 8.7e-155 551.2 544 63.4
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 6.7e-38 162.9 451 35.5
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 3.3e-29 134.0 212 44.8
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 1.7e-25 121.7 451 33.5
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 3.8e-25 120.6 269 36.8
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 1.0e-22 112.5 408 30.6
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 1.3e-22 112.1 285 34.7
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 1.1e-21 109.0 204 41.7
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 2.5e-21 107.8 465 30.1
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 5.7e-21 106.7 154 44.2
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 6.3e-20 103.2 258 36.0
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 1.4e-19 102.1 177 43.5
TAR636G2263 Trochodendron aralioides HOM05D007504 ORTHO05D007629 4.1e-19 100.5 140 45.0
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.2e-18 99.0 513 31.0
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 2.0e-18 98.2 152 46.1
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 2.6e-18 97.8 480 29.0
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 1.0e-17 95.9 243 37.4
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 1.3e-17 95.5 118 46.6
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 2.9e-17 94.4 555 28.1
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 5.0e-17 93.6 277 36.1
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 5.0e-17 93.6 368 29.9
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 6.5e-17 93.2 381 30.7
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 8.5e-17 92.8 314 32.5
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 8.5e-17 92.8 355 29.9
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 4.2e-16 90.5 402 29.1
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 7.2e-16 89.7 327 28.7
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 1.2e-15 89.0 205 38.5
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 1.2e-15 89.0 517 26.7
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 2.7e-15 87.8 392 28.3
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 3.6e-15 87.4 199 35.2
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 3.6e-15 87.4 232 36.6
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 4.6e-15 87.0 386 30.1
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 6.1e-15 86.7 512 29.1
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 1.8e-14 85.1 177 37.9
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 3.9e-14 84.0 284 32.7
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 1.1e-13 82.4 159 37.1
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 2.8e-12 77.8 474 29.7
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 1.1e-11 75.9 216 32.9
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 1.4e-11 75.5 539 27.1
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 1.4e-11 75.5 90 45.6
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.4e-11 75.5 186 36.6
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 1.4e-11 75.5 489 26.6
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 4.1e-11 73.9 228 33.3
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 4.1e-11 73.9 221 33.0
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 5.3e-11 73.6 444 28.4
Cpa.g.sc123.15 Carica papaya HOM05D007504 ORTHO05D007629 9.1e-11 72.8 97 42.3
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 9.1e-11 72.8 75 56.0
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 1.2e-10 72.4 200 33.0
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 4.5e-10 70.5 200 32.5
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 4.5e-10 70.5 201 30.8
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 4.5e-10 70.5 209 33.0
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 4.5e-10 70.5 215 33.0
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 5.9e-10 70.1 221 29.4
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 5.9e-10 70.1 334 26.6
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 5.9e-10 70.1 316 27.5
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 7.7e-10 69.7 268 28.7
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 1.3e-09 68.9 198 35.9
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 1.3e-09 68.9 210 31.9
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 2.2e-09 68.2 228 29.8
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 2.9e-09 67.8 392 27.3
Haze_03334 Corylus avellana HOM05D007504 ORTHO05D007629 3.8e-09 67.4 90 46.7
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 5.0e-09 67.0 181 33.7
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 6.5e-09 66.6 68 45.6
ATR0609G018 Amborella trichopoda HOM05D007504 ORTHO05D007629 1.1e-08 65.9 188 33.5
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 1.4e-08 65.5 75 44.0
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 1.4e-08 65.5 494 26.3
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.4e-08 65.5 494 26.7
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 7.2e-08 63.2 306 28.1
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 7.2e-08 63.2 71 39.4
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 9.4e-08 62.8 493 25.8
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 2.1e-07 61.6 206 30.1
HPP92_020229 Vanilla planifolia HOM05D007504 ORTHO05D007629 2.1e-07 61.6 61 49.2
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 2.7e-07 61.2 208 31.2
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 2.7e-07 61.2 224 30.4
Phvul.010G077868 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 3.6e-07 60.8 251 29.5
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 4.7e-07 60.5 230 28.3
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 6.1e-07 60.1 482 25.1
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 1.0e-06 59.3 372 28.8
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 1.0e-06 59.3 509 23.4
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 1.4e-06 58.9 356 29.5
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 2.3e-06 58.2 89 37.1
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 2.3e-06 58.2 89 37.1
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 3.0e-06 57.8 406 25.9
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 3.0e-06 57.8 215 29.8
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 5.1e-06 57.0 160 31.9
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 6.7e-06 56.6 89 36.0
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 8.8e-06 56.2 90 37.8


User provided reference genes

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