Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 0.0e+00 1327.4 719 100.0
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 0.0e+00 1292.7 720 97.1
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 0.0e+00 1227.6 726 92.4
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 1.2e-292 1009.6 678 80.5
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 2.8e-273 945.3 684 76.3
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 1.5e-266 922.9 723 72.8
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 7.0e-200 701.4 682 63.2
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 1.3e-126 458.0 745 42.8
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 8.5e-121 438.7 695 44.0
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 1.4e-120 438.0 633 45.7
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 3.7e-116 423.3 688 43.0
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 2.6e-114 417.2 745 40.4
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 8.2e-108 395.6 721 41.1
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 9.1e-107 392.1 648 43.2
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 4.7e-103 379.8 672 40.0
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 1.4e-102 378.3 698 39.4
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 2.3e-102 377.5 701 40.4
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 1.5e-101 374.8 559 45.1
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 2.0e-101 374.4 696 40.2
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 2.6e-101 374.0 713 40.3
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 1.3e-100 371.7 711 39.9
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 6.3e-100 369.4 699 39.5
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 8.2e-100 369.0 701 39.7
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 1.1e-99 368.6 672 39.4
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 1.4e-99 368.2 721 39.1
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 2.4e-99 367.5 708 40.0
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 4.1e-99 366.7 714 39.4
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 4.1e-99 366.7 736 39.0
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 9.1e-99 365.5 715 39.3
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 1.2e-98 365.2 717 39.1
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 3.5e-98 363.6 718 40.5
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 7.7e-98 362.5 730 37.4
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 1.3e-97 361.7 707 39.5
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 1.7e-97 361.3 704 39.1
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 8.5e-97 359.0 618 40.5
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 1.9e-96 357.8 700 38.4
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 5.5e-96 356.3 670 39.3
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 2.7e-95 354.0 622 40.4
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 8.0e-95 352.4 639 40.8
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 2.3e-94 350.9 662 40.3
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 3.0e-94 350.5 721 39.0
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 8.8e-94 349.0 541 44.0
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 3.4e-93 347.1 718 39.4
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 4.4e-93 346.7 778 36.4
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 1.1e-91 342.0 728 39.0
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 2.4e-91 340.9 720 38.5
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 9.1e-91 339.0 713 38.0
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 3.8e-89 333.6 394 49.0
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 8.5e-89 332.4 693 36.5
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 8.5e-89 332.4 700 37.3
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 9.4e-88 328.9 599 40.9
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 1.6e-87 328.2 692 37.9
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 2.0e-85 321.2 596 39.1
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 7.5e-85 319.3 660 39.4
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 2.2e-84 317.8 670 35.8
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 4.9e-84 316.6 603 40.0
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 1.8e-83 314.7 687 37.7
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 2.4e-83 314.3 522 42.9
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 3.1e-83 313.9 691 37.3
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.7e-81 308.1 716 36.0
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 2.9e-81 307.4 450 43.8
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 3.3e-80 303.9 709 36.0
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 3.3e-80 303.9 493 42.8
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 5.6e-80 303.1 656 37.2
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 5.6e-80 303.1 577 39.0
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 4.7e-79 300.1 675 35.3
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 6.1e-79 299.7 564 39.0
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 6.1e-79 299.7 687 36.0
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 3.0e-78 297.4 580 38.1
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 4.0e-78 297.0 568 38.6
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 4.4e-77 293.5 537 39.7
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 5.7e-77 293.1 628 36.8
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 7.5e-77 292.7 674 36.1
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 9.8e-77 292.4 615 36.9
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 2.2e-76 291.2 682 35.9
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 2.9e-76 290.8 634 36.6
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 3.7e-76 290.4 682 35.9
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 2.4e-75 287.7 682 35.8
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 4.1e-75 287.0 489 39.1
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 2.0e-74 284.6 687 34.2
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 2.0e-74 284.6 687 34.2
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 7.8e-74 282.7 660 35.2
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 6.6e-73 279.6 420 44.5
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 2.0e-66 258.1 736 32.9
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 2.0e-61 241.5 423 39.5
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 2.9e-60 237.7 502 39.2
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 1.7e-57 228.4 687 32.8
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 3.0e-57 227.6 403 40.7
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 6.2e-55 219.9 395 40.5
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 3.8e-52 210.7 375 38.4
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 2.7e-50 204.5 387 38.5
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 6.9e-46 189.9 516 34.3
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 2.7e-42 177.9 345 35.4
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 3.5e-42 177.6 327 42.8
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 7.3e-40 169.9 374 39.0
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 1.6e-39 168.7 579 29.5
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 6.2e-39 166.8 362 35.4
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 6.2e-39 166.8 617 30.1
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 9.0e-38 162.9 289 41.9
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 1.2e-37 162.5 438 35.8
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 1.2e-37 162.5 616 27.3
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 4.2e-35 154.1 364 36.3
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 1.2e-34 152.5 393 34.9
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 7.4e-32 143.3 736 26.8
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 2.1e-31 141.7 339 31.0
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 1.1e-30 139.4 103 69.9
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 1.4e-30 139.0 338 37.0
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 6.4e-28 130.2 244 35.7
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 4.2e-27 127.5 220 38.2
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 3.1e-22 111.3 112 57.1
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 1.7e-20 105.5 134 51.5
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 3.8e-20 104.4 207 38.2
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 1.5e-13 82.4 109 43.1
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 8.5e-12 76.6 168 36.3
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 2.7e-10 71.6 284 26.8
MBI18_g46978_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 3.0e-09 68.2 187 33.2
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 9.7e-08 63.2 47 70.2
C05p62930 Brassica napus HOM05D000005 ORTHO05D000294 2.2e-07 62.0 114 36.0
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 4.8e-07 60.8 43 69.8


User provided reference genes

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