Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g020260 Solanum pennellii HOM05D007732 ORTHO05D000137 1.1e-103 380.6 281 100.0
Sopen01g009410 Solanum pennellii HOM05D000002 ORTHO05D000001 7.1e-31 138.7 110 65.5
Sopen03g027130 Solanum pennellii HOM05D007732 ORTHO05D000137 1.5e-28 131.0 116 64.7
Sopen03g011290 Solanum pennellii HOM05D007732 ORTHO05D010105 2.1e-27 127.1 115 60.9
Sopen07g007480 Solanum pennellii HOM05D007732 ORTHO05D010105 4.3e-20 102.8 67 73.1
Sopen12g009250 Solanum pennellii HOM05D000541 ORTHO05D000137 9.6e-20 101.7 48 93.8
Sopen04g012070 Solanum pennellii HOM05D007732 ORTHO05D010105 3.6e-19 99.8 204 33.8
PGSC0003DMG400021760 Solanum tuberosum HOM05D007732 ORTHO05D000137 4.8e-19 99.4 50 86.0
Sopen01g023300 Solanum pennellii HOM05D000541 ORTHO05D000137 6.2e-19 99.0 47 91.5
Sopen01g016520 Solanum pennellii HOM05D000541 ORTHO05D000137 1.4e-18 97.8 47 91.5
Sopen05g014530 Solanum pennellii HOM05D007732 ORTHO05D010105 1.4e-18 97.8 48 89.6
CAN.G62.41 Capsicum annuum HOM05D000537 ORTHO05D011153 2.4e-18 97.1 88 63.6
Sopen12g017740 Solanum pennellii HOM05D007732 ORTHO05D000137 3.1e-18 96.7 48 89.6
PGSC0003DMG400017979 Solanum tuberosum HOM05D000541 ORTHO05D000137 4.0e-18 96.3 47 89.4
Nitab4.5_0013991g0010 Nicotiana tabacum HOM05D000312 ORTHO05D000221 5.3e-18 95.9 86 65.1
CAN.G184.31 Capsicum annuum HOM05D000312 ORTHO05D000221 6.9e-18 95.5 80 66.2
Nitab4.5_0000259g0190 Nicotiana tabacum HOM05D000312 ORTHO05D000221 9.0e-18 95.1 84 67.9
Nitab4.5_0012307g0010 Nicotiana tabacum HOM05D000312 ORTHO05D011153 2.0e-17 94.0 86 64.0
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 2.0e-17 94.0 48 85.4
Sopen05g006160 Solanum pennellii HOM05D000312 ORTHO05D011153 2.0e-17 94.0 86 62.8
PGSC0003DMG400002289 Solanum tuberosum HOM05D007732 ORTHO05D010105 3.4e-17 93.2 47 85.1
PGSC0003DMG400001026 Solanum tuberosum HOM05D024590 ORTHO05D026188 5.8e-17 92.4 47 87.2
Sopen06g014640 Solanum pennellii HOM05D007732 ORTHO05D000137 9.9e-17 91.7 46 87.0
PGSC0003DMG400004209 Solanum tuberosum HOM05D000541 ORTHO05D000137 9.9e-17 91.7 47 85.1
Sopen12g020050 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-16 90.9 47 87.2
Sopen08g015080 Solanum pennellii HOM05D000047 ORTHO05D009630 2.9e-16 90.1 47 83.0
Sopen07g007130 Solanum pennellii HOM05D007732 ORTHO05D000137 4.9e-16 89.4 47 85.1
PGSC0003DMG400047195 Solanum tuberosum HOM05D009555 ORTHO05D000137 6.4e-16 89.0 87 52.9
Sopen07g014800 Solanum pennellii HOM05D000541 ORTHO05D000137 1.1e-15 88.2 47 80.9
Sopen04g021580 Solanum pennellii HOM05D000004 ORTHO05D000002 1.9e-15 87.4 69 71.0
Sopen05g006190 Solanum pennellii HOM05D000312 ORTHO05D011153 5.4e-15 85.9 86 59.3
CAN.G1352.9 Capsicum annuum HOM05D000312 ORTHO05D000221 1.1e-12 78.2 78 56.4
Sopen12g018430 Solanum pennellii HOM05D007732 ORTHO05D000137 1.9e-12 77.4 45 77.8
PGSC0003DMG400025113 Solanum tuberosum HOM05D000312 ORTHO05D011153 1.9e-12 77.4 68 64.7
Sopen01g022190 Solanum pennellii HOM05D007732 ORTHO05D010105 3.3e-12 76.6 79 63.3
Peaxi162Scf00179g00627 Petunia axillaris HOM05D000312 ORTHO05D000221 4.3e-12 76.3 90 47.8
CAN.G1352.2 Capsicum annuum HOM05D000312 ORTHO05D000221 5.6e-12 75.9 85 51.8
Nitab4.5_0003071g0050 Nicotiana tabacum HOM05D000312 ORTHO05D000221 5.6e-12 75.9 83 55.4
CAN.G1352.6 Capsicum annuum HOM05D000312 ORTHO05D011153 6.2e-11 72.4 78 53.8
Sopen03g016100 Solanum pennellii HOM05D007732 ORTHO05D010105 6.2e-11 72.4 35 91.4
Nitab4.5_0014640g0010 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.1e-10 71.6 77 57.1
PGSC0003DMG403013246 Solanum tuberosum HOM05D000312 ORTHO05D000221 1.1e-10 71.6 84 48.8
CAN.G184.29 Capsicum annuum HOM05D000312 ORTHO05D000221 1.8e-10 70.9 54 68.5
Peaxi162Scf00188g00541 Petunia axillaris HOM05D000312 ORTHO05D000221 1.8e-10 70.9 80 51.2
Nitab4.5_0000249g0280 Nicotiana tabacum HOM05D000312 ORTHO05D000221 4.0e-10 69.7 83 51.8
Peaxi162Scf00980g00130 Petunia axillaris HOM05D000312 ORTHO05D000221 4.0e-10 69.7 82 48.8
Sopen08g008470 Solanum pennellii HOM05D007732 ORTHO05D000137 4.0e-10 69.7 40 75.0
Peaxi162Scf00179g00626 Petunia axillaris HOM05D000312 ORTHO05D000221 5.3e-10 69.3 99 45.5
Nitab4.5_0006160g0020 Nicotiana tabacum HOM05D000312 ORTHO05D000221 6.9e-10 68.9 75 49.3
Nitab4.5_0000259g0220 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.2e-09 68.2 83 50.6
Peaxi162Scf00179g00715 Petunia axillaris HOM05D000312 ORTHO05D000221 1.2e-09 68.2 83 48.2
PGSC0003DMG400045388 Solanum tuberosum HOM05D000312 ORTHO05D011153 1.5e-09 67.8 56 66.1
CAN.G184.27 Capsicum annuum HOM05D000312 ORTHO05D000221 2.0e-09 67.4 67 52.2
Sopen11g006330 Solanum pennellii HOM05D000312 ORTHO05D000221 2.0e-09 67.4 77 50.6
CAN.G184.30 Capsicum annuum HOM05D000312 ORTHO05D011153 2.6e-09 67.0 114 43.0
Nitab4.5_0010778g0010 Nicotiana tabacum HOM05D000312 ORTHO05D000221 2.6e-09 67.0 82 43.9
Sopen05g006140 Solanum pennellii HOM05D000312 ORTHO05D000221 3.4e-09 66.6 78 50.0
Peaxi162Scf00124g01514 Petunia axillaris HOM05D000312 ORTHO05D000221 4.5e-09 66.2 74 51.4
Sopen03g017640 Solanum pennellii HOM05D007732 ORTHO05D010105 4.5e-09 66.2 79 49.4
Nitab4.5_0005124g0040 Nicotiana tabacum HOM05D000312 ORTHO05D000221 5.8e-09 65.9 86 48.8
PGSC0003DMG400025114 Solanum tuberosum HOM05D000312 ORTHO05D000221 5.8e-09 65.9 98 43.9
PGSC0003DMG404013246 Solanum tuberosum HOM05D000312 ORTHO05D000221 5.8e-09 65.9 75 54.7
CAN.G677.4 Capsicum annuum HOM05D000312 ORTHO05D000221 7.6e-09 65.5 78 46.2
Peaxi162Scf00179g00625 Petunia axillaris HOM05D000312 ORTHO05D000221 7.6e-09 65.5 46 73.9
PGSC0003DMG400013311 Solanum tuberosum HOM05D000312 ORTHO05D000221 7.6e-09 65.5 77 48.1
Peaxi162Scf00179g00628 Petunia axillaris HOM05D000312 ORTHO05D000221 9.9e-09 65.1 105 46.7
Sopen05g006560 Solanum pennellii HOM05D000312 ORTHO05D000221 9.9e-09 65.1 78 48.7
Peaxi162Scf00124g01311 Petunia axillaris HOM05D000312 ORTHO05D000221 2.9e-08 63.5 85 43.5
Peaxi162Scf00464g00436 Petunia axillaris HOM05D000312 ORTHO05D000221 2.9e-08 63.5 85 43.5
Sopen11g006420 Solanum pennellii HOM05D000312 ORTHO05D000221 2.9e-08 63.5 81 53.1
PGSC0003DMG403013245 Solanum tuberosum HOM05D000312 ORTHO05D000221 2.9e-08 63.5 83 48.2
ECA234G0786 Erigeron canadensis HOM05D000312 ORTHO05D000221 3.8e-08 63.2 79 40.5
Peaxi162Scf00124g00168 Petunia axillaris HOM05D000312 ORTHO05D000221 3.8e-08 63.2 94 46.8
Rhsim12G0068900 Rhododendron simsii HOM05D000312 ORTHO05D000221 3.8e-08 63.2 85 44.7
Sopen11g006410 Solanum pennellii HOM05D000312 ORTHO05D000221 3.8e-08 63.2 82 43.9
Cc09_g08750 Coffea canephora HOM05D000312 ORTHO05D000221 4.9e-08 62.8 80 43.8
Peaxi162Scf00179g00710 Petunia axillaris HOM05D000312 ORTHO05D000221 4.9e-08 62.8 88 45.5
Peaxi162Scf00179g00815 Petunia axillaris HOM05D000312 ORTHO05D000221 4.9e-08 62.8 87 40.2
Nitab4.5_0001438g0180 Nicotiana tabacum HOM05D000312 ORTHO05D000221 6.4e-08 62.4 74 55.4
Nitab4.5_0001650g0060 Nicotiana tabacum HOM05D000312 ORTHO05D000221 8.4e-08 62.0 81 46.9
Peaxi162Scf00179g00919 Petunia axillaris HOM05D000312 ORTHO05D000221 8.4e-08 62.0 90 43.3
CAN.G222.77 Capsicum annuum HOM05D000312 ORTHO05D000221 1.4e-07 61.2 75 46.7
Nitab4.5_0002312g0130 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.4e-07 61.2 85 45.9
Nitab4.5_0007853g0060 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.4e-07 61.2 74 52.7
Peaxi162Scf00124g01735 Petunia axillaris HOM05D000312 ORTHO05D000221 1.4e-07 61.2 95 45.3
CAN.G1338.2 Capsicum annuum HOM05D000312 ORTHO05D000221 1.9e-07 60.8 82 47.6
CAN.G184.21 Capsicum annuum HOM05D000312 ORTHO05D011153 1.9e-07 60.8 81 42.0
Peaxi162Scf00124g01738 Petunia axillaris HOM05D000312 ORTHO05D000221 1.9e-07 60.8 79 51.9
Peaxi162Scf00618g00630 Petunia axillaris HOM05D000312 ORTHO05D000221 1.9e-07 60.8 93 41.9
CAN.G184.26 Capsicum annuum HOM05D000312 ORTHO05D000221 2.4e-07 60.5 84 42.9
Peaxi162Scf00618g00746 Petunia axillaris HOM05D000312 ORTHO05D000221 2.4e-07 60.5 91 47.3
Sopen04g015780 Solanum pennellii HOM05D007732 ORTHO05D000137 2.4e-07 60.5 69 62.3
Actinidia24036 Actinidia chinensis HOM05D000312 ORTHO05D000221 3.2e-07 60.1 80 46.2
Sopen11g006400 Solanum pennellii HOM05D000312 ORTHO05D000221 3.2e-07 60.1 79 43.0
Sopen09g006850 Solanum pennellii HOM05D000312 ORTHO05D011153 4.2e-07 59.7 76 46.1
CAN.G184.69 Capsicum annuum HOM05D002308 ORTHO05D002535 5.5e-07 59.3 52 48.1
Cc10_g03500 Coffea canephora HOM05D000312 ORTHO05D000221 5.5e-07 59.3 75 44.0
Sopen05g010040 Solanum pennellii HOM05D007732 ORTHO05D010105 5.5e-07 59.3 64 54.7
CAN.G184.28 Capsicum annuum HOM05D000312 ORTHO05D000221 7.1e-07 58.9 83 43.4
Peaxi162Scf00980g00131 Petunia axillaris HOM05D000312 ORTHO05D000221 7.1e-07 58.9 75 46.7
Sopen04g020360 Solanum pennellii HOM05D000312 ORTHO05D011153 7.1e-07 58.9 56 58.9
CAN.G680.3 Capsicum annuum HOM05D000312 ORTHO05D020289 9.3e-07 58.5 98 41.8
Hma1.2p1_0189F.1_g082810 Hydrangea macrophylla HOM05D000312 ORTHO05D000221 9.3e-07 58.5 84 42.9
Nitab4.5_0000021g0680 Nicotiana tabacum HOM05D000312 ORTHO05D020289 9.3e-07 58.5 75 46.7
Nitab4.5_0000027g0360 Nicotiana tabacum HOM05D000312 ORTHO05D000221 9.3e-07 58.5 77 48.1
Peaxi162Scf00124g01418 Petunia axillaris HOM05D000312 ORTHO05D000221 9.3e-07 58.5 88 45.5
Peaxi162Scf00618g00745 Petunia axillaris HOM05D000312 ORTHO05D000221 9.3e-07 58.5 93 44.1
Peaxi162Scf02754g00015 Petunia axillaris HOM05D000312 ORTHO05D000221 9.3e-07 58.5 75 42.7
Sopen07g008740 Solanum pennellii HOM05D007732 ORTHO05D010105 9.3e-07 58.5 83 43.4
Sopen10g014500 Solanum pennellii HOM05D000541 ORTHO05D010105 9.3e-07 58.5 99 42.4
Sopen11g006340 Solanum pennellii HOM05D000312 ORTHO05D000221 9.3e-07 58.5 76 47.4
PGSC0003DMG402013246 Solanum tuberosum HOM05D000312 ORTHO05D000221 9.3e-07 58.5 78 43.6
Lsat_1_v5_gn_4_17000 Lactuca sativa HOM05D000312 ORTHO05D000221 1.2e-06 58.2 100 38.0
Nitab4.5_0001577g0010 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.2e-06 58.2 85 44.7
Nitab4.5_0004730g0050 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.2e-06 58.2 102 40.2
Sopen04g020370 Solanum pennellii HOM05D000004 ORTHO05D000002 1.2e-06 58.2 48 64.6
Sopen05g006150 Solanum pennellii HOM05D000312 ORTHO05D000221 1.2e-06 58.2 81 50.6
CSS0021406 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D000221 1.6e-06 57.8 81 44.4
Nitab4.5_0001762g0020 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.6e-06 57.8 85 45.9
Actinidia38025 Actinidia chinensis HOM05D000312 ORTHO05D000221 2.1e-06 57.4 75 48.0
CAN.G22.16 Capsicum annuum HOM05D000541 ORTHO05D000137 2.1e-06 57.4 51 49.0
CAN.G279.30 Capsicum annuum HOM05D000541 ORTHO05D000137 2.1e-06 57.4 57 47.4
Hma1.2p1_0189F.1_g082790 Hydrangea macrophylla HOM05D000312 ORTHO05D000221 2.1e-06 57.4 78 44.9
Peaxi162Scf00179g00816 Petunia axillaris HOM05D000312 ORTHO05D000221 2.1e-06 57.4 84 42.9
Sopen04g019510 Solanum pennellii HOM05D000312 ORTHO05D011153 2.1e-06 57.4 54 59.3
PGSC0003DMG400025093 Solanum tuberosum HOM05D000312 ORTHO05D000221 2.1e-06 57.4 81 49.4
CAN.G84.39 Capsicum annuum HOM05D000541 ORTHO05D000137 2.7e-06 57.0 51 49.0
Nitab4.5_0001438g0190 Nicotiana tabacum HOM05D000312 ORTHO05D000221 2.7e-06 57.0 69 53.6
Peaxi162Scf00121g00314 Petunia axillaris HOM05D000312 ORTHO05D000221 2.7e-06 57.0 79 39.2
Sopen07g011910 Solanum pennellii HOM05D007732 ORTHO05D010105 2.7e-06 57.0 78 51.3
CSS0000659 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D000221 3.5e-06 56.6 81 40.7
CSS0045942 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D000221 3.5e-06 56.6 81 40.7
CAN.G388.78 Capsicum annuum HOM05D000541 ORTHO05D000137 3.5e-06 56.6 49 46.9
CAN.G520.5 Capsicum annuum HOM05D000541 ORTHO05D000137 3.5e-06 56.6 49 46.9
Lsat_1_v5_gn_4_17020 Lactuca sativa HOM05D000312 ORTHO05D000221 3.5e-06 56.6 85 36.5
Nitab4.5_0015989g0010 Nicotiana tabacum HOM05D000312 ORTHO05D000221 3.5e-06 56.6 97 41.2
Sopen11g006360 Solanum pennellii HOM05D000312 ORTHO05D000221 3.5e-06 56.6 85 43.5
CAN.G134.209 Capsicum annuum HOM05D000541 ORTHO05D000137 4.6e-06 56.2 49 51.0
CAN.G645.28 Capsicum annuum HOM05D000541 ORTHO05D000137 4.6e-06 56.2 52 46.2
Nitab4.5_0000110g0120 Nicotiana tabacum HOM05D000312 ORTHO05D000221 4.6e-06 56.2 75 42.7
CAN.G1299.4 Capsicum annuum HOM05D000541 ORTHO05D000137 6.0e-06 55.8 51 47.1
CAN.G174.8 Capsicum annuum HOM05D000541 ORTHO05D000137 6.0e-06 55.8 49 46.9
CAN.G371.120 Capsicum annuum HOM05D000312 ORTHO05D000221 6.0e-06 55.8 75 41.3
CAN.G567.51 Capsicum annuum HOM05D000541 ORTHO05D000137 6.0e-06 55.8 49 49.0
CAN.G610.2 Capsicum annuum HOM05D000541 ORTHO05D000137 6.0e-06 55.8 49 49.0
CAN.G677.3 Capsicum annuum HOM05D000312 ORTHO05D000221 6.0e-06 55.8 103 42.7
CAN.G809.25 Capsicum annuum HOM05D000541 ORTHO05D000137 6.0e-06 55.8 49 51.0
Sopen09g022580 Solanum pennellii HOM05D007732 ORTHO05D010105 6.0e-06 55.8 47 57.4
CAN.G157.1 Capsicum annuum HOM05D000541 ORTHO05D000137 7.9e-06 55.5 49 46.9
Lsat_1_v5_gn_4_16801 Lactuca sativa HOM05D000312 ORTHO05D000221 7.9e-06 55.5 82 35.4
Nitab4.5_0008587g0030 Nicotiana tabacum HOM05D000312 ORTHO05D000221 7.9e-06 55.5 75 44.0


User provided reference genes

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