Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 3.0e-148 528.5 265 100.0
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.5e-147 525.4 265 99.6
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.2e-138 495.7 265 94.7
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.1e-137 491.9 265 94.0
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 2.2e-135 485.7 265 92.8
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 4.5e-128 461.5 259 88.4
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 1.0e-127 460.3 264 86.7
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 1.4e-126 456.4 262 87.8
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.4e-126 456.4 264 85.2
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 3.2e-126 455.3 260 87.3
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 4.2e-126 454.9 264 85.6
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 5.5e-126 454.5 262 86.6
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 7.2e-126 454.1 265 87.2
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.2e-125 453.4 259 86.1
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.6e-125 453.0 265 87.2
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 2.1e-125 452.6 264 84.5
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 2.1e-125 452.6 264 85.2
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 2.7e-125 452.2 264 85.2
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 4.7e-125 451.4 262 85.1
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 3.0e-124 448.7 262 85.9
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 6.7e-124 447.6 262 85.9
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 6.7e-124 447.6 264 85.6
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 1.1e-123 446.8 264 84.8
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 1.1e-123 446.8 262 85.9
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 2.0e-123 446.0 264 84.1
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 2.0e-123 446.0 262 85.1
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 2.6e-123 445.7 265 84.9
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.7e-123 444.5 262 85.1
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.7e-123 444.5 264 84.1
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 7.4e-123 444.1 262 83.2
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 7.4e-123 444.1 264 84.1
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 1.3e-122 443.4 264 82.6
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.3e-122 443.4 264 83.7
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 2.2e-122 442.6 264 83.3
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.7e-122 441.8 264 83.0
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 6.3e-122 441.0 262 82.8
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 6.3e-122 441.0 264 83.0
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 1.1e-121 440.3 263 84.0
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 1.1e-121 440.3 265 84.5
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 1.8e-121 439.5 264 84.1
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.8e-121 439.5 250 88.4
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 3.1e-121 438.7 262 83.2
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 5.3e-121 438.0 260 85.8
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 7.0e-121 437.6 252 86.1
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 1.2e-120 436.8 264 83.0
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.0e-120 436.0 265 83.8
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 3.5e-120 435.3 262 83.2
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 4.5e-120 434.9 265 83.4
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 4.5e-120 434.9 263 83.7
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.2e-119 432.6 252 86.5
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.9e-119 432.2 264 83.0
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 5.0e-119 431.4 265 82.6
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 1.1e-118 430.3 264 81.1
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 3.2e-118 428.7 264 83.7
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 9.4e-118 427.2 262 80.2
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 1.6e-117 426.4 250 83.6
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 2.7e-117 425.6 260 81.9
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 2.7e-117 425.6 271 80.1
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 4.7e-117 424.9 266 78.6
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 4.7e-117 424.9 264 81.4
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 6.1e-117 424.5 260 83.5
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 8.0e-117 424.1 262 82.8
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 8.0e-117 424.1 264 81.1
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.4e-116 423.3 264 80.7
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 1.8e-116 422.9 261 82.4
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 1.8e-116 422.9 263 82.9
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 6.7e-116 421.0 263 81.4
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 8.8e-116 420.6 262 79.4
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 8.8e-116 420.6 272 79.8
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.1e-115 420.2 264 80.7
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 3.3e-115 418.7 262 80.2
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 4.4e-115 418.3 264 81.1
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 4.4e-115 418.3 254 82.7
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 5.7e-115 417.9 264 79.2
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 5.7e-115 417.9 267 79.4
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.2e-114 416.0 251 80.9
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 6.3e-114 414.5 284 75.7
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 1.1e-113 413.7 263 80.2
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 7.0e-113 411.0 264 78.8
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.6e-112 409.8 287 73.9
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 1.6e-112 409.8 262 79.0
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 1.6e-112 409.8 261 81.2
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 2.6e-112 409.1 259 78.8
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 3.5e-112 408.7 264 78.0
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 7.7e-112 407.5 264 79.2
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.0e-111 407.1 264 77.7
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.0e-111 407.1 257 80.5
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.7e-111 406.4 265 77.4
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.8e-111 405.2 262 78.6
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 6.5e-111 404.4 262 78.6
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 6.5e-111 404.4 303 70.6
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.6e-109 398.7 262 77.9
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 8.0e-109 397.5 284 74.6
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 8.0e-109 397.5 256 78.9
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 1.8e-108 396.4 279 73.1
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 1.8e-108 396.4 266 76.3
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 4.0e-108 395.2 262 77.5
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 1.5e-107 393.3 260 77.3
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 2.6e-107 392.5 235 82.1
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 2.6e-107 392.5 261 76.6
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 3.3e-107 392.1 252 78.6
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.8e-106 389.0 262 76.7
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 1.1e-105 387.1 261 75.1
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 1.8e-105 386.3 260 75.0
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 7.7e-104 380.9 317 65.6
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.9e-103 379.0 250 76.8
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.6e-101 373.2 257 73.2
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.6e-101 373.2 257 73.2
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 4.0e-100 368.6 259 74.5
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 5.2e-100 368.2 264 72.7
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.2e-99 367.1 263 71.5
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 2.6e-99 365.9 272 71.7
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 3.4e-99 365.5 266 71.4
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 4.4e-99 365.2 260 71.5
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 8.3e-98 360.9 262 71.0
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 1.1e-97 360.5 265 70.9
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 2.4e-97 359.4 257 71.6
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 4.1e-97 358.6 235 77.9
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 1.6e-96 356.7 263 70.3
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 3.5e-96 355.5 262 70.2
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 5.9e-96 354.8 262 69.8
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.3e-95 353.6 226 79.2
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 1.7e-95 353.2 262 69.1
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 1.7e-95 353.2 262 69.1
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.3e-95 352.8 262 70.2
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 6.6e-95 351.3 257 70.8
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 8.6e-95 350.9 197 89.8
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 1.1e-94 350.5 262 69.5
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 1.5e-94 350.1 262 69.1
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 7.2e-94 347.8 262 68.7
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 7.2e-94 347.8 262 68.7
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 4.7e-93 345.1 263 69.2
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.0e-92 344.0 261 69.3
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.4e-92 343.6 262 68.7
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 3.0e-92 342.4 262 68.7
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 4.0e-92 342.0 260 69.2
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 6.8e-92 341.3 252 69.4
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 2.0e-91 339.7 262 68.7
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 3.4e-91 339.0 281 64.8
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 4.4e-91 338.6 206 83.0
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 1.1e-89 334.0 197 85.8
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.0e-87 327.4 262 65.6
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 1.8e-84 316.6 262 63.7
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 8.9e-84 314.3 260 64.6
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 1.2e-83 313.9 262 63.4
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 1.3e-82 310.5 260 63.5
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 7.0e-81 304.7 260 62.7
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 3.5e-80 302.4 259 61.4
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.2e-77 293.9 241 66.8
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 5.8e-75 285.0 189 76.2
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.3e-71 273.1 144 91.7
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.1e-71 271.9 171 78.4
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 6.9e-44 181.8 238 49.2
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 2.7e-40 169.9 282 40.4
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 7.9e-40 168.3 244 43.4
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 2.5e-38 163.3 148 57.4
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 4.0e-36 156.0 118 68.6
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 1.7e-34 150.6 107 71.0
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.3e-30 136.0 74 93.2
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 4.8e-29 132.5 93 71.0
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-26 122.9 261 37.2
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 3.2e-25 119.8 76 77.6
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 2.9e-18 96.7 176 37.5
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 1.9e-17 94.0 124 41.1
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 2.3e-15 87.0 85 54.1
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 1.1e-12 78.2 41 80.5
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.4e-12 77.0 40 87.5
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.2e-11 74.7 41 80.5
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 2.6e-11 73.6 43 74.4
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 1.7e-10 70.9 124 42.7
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 2.3e-07 60.5 156 30.8
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 3.9e-07 59.7 86 33.7
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 1.5e-06 57.8 32 90.6


User provided reference genes

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