Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 3.9e-92 341.7 201 100.0
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 2.0e-88 329.3 204 96.1
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 2.6e-75 285.8 202 83.7
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 2.9e-71 272.3 201 84.6
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 8.3e-66 254.2 202 75.7
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 3.0e-60 235.7 202 76.7
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 2.4e-57 226.1 205 70.7
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 3.8e-55 218.8 200 69.0
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 4.0e-52 208.8 203 70.9
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 1.0e-31 141.0 146 55.5
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 5.6e-30 135.2 137 59.1
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 5.6e-30 135.2 142 55.6
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 7.3e-30 134.8 211 53.1
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 6.2e-29 131.7 207 53.1
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 1.4e-28 130.6 136 55.9
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 3.1e-28 129.4 142 53.5
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 5.2e-28 128.6 206 48.1
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 5.2e-28 128.6 137 57.7
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 8.9e-28 127.9 131 58.8
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 8.9e-28 127.9 153 54.9
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 8.9e-28 127.9 139 55.4
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 8.9e-28 127.9 150 56.0
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 1.2e-27 127.5 206 52.4
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.2e-27 127.5 206 47.6
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.5e-27 127.1 149 53.0
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.0e-27 126.7 138 58.7
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 2.6e-27 126.3 142 56.3
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 5.8e-27 125.2 205 46.3
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 5.8e-27 125.2 209 45.9
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 5.8e-27 125.2 208 45.7
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 1.3e-26 124.0 149 53.0
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 1.3e-26 124.0 206 46.1
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 1.7e-26 123.6 204 46.1
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 2.2e-26 123.2 134 56.0
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 6.4e-26 121.7 143 52.4
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 6.4e-26 121.7 150 53.3
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 8.4e-26 121.3 214 51.9
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 8.4e-26 121.3 212 49.1
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.1e-25 120.9 150 50.7
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.4e-25 120.6 147 53.7
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 1.9e-25 120.2 212 46.2
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.9e-25 120.2 143 53.8
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 2.4e-25 119.8 138 52.9
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 3.2e-25 119.4 148 52.0
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 3.2e-25 119.4 147 51.7
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 3.2e-25 119.4 146 53.4
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 4.2e-25 119.0 149 53.7
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 4.2e-25 119.0 204 49.5
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 4.2e-25 119.0 137 55.5
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 5.4e-25 118.6 142 54.2
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 5.4e-25 118.6 138 52.9
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 5.4e-25 118.6 138 53.6
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 7.1e-25 118.2 150 52.0
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 7.1e-25 118.2 204 49.0
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 9.2e-25 117.9 205 50.7
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 1.2e-24 117.5 142 50.0
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 2.1e-24 116.7 148 50.7
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 2.1e-24 116.7 208 42.8
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 6.0e-24 115.2 137 52.6
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 6.0e-24 115.2 135 53.3
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 7.8e-24 114.8 135 51.9
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 7.8e-24 114.8 139 48.9
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 1.0e-23 114.4 146 52.1
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 1.0e-23 114.4 146 50.0
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 1.0e-23 114.4 211 45.0
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 1.0e-23 114.4 138 52.9
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 1.0e-23 114.4 184 48.9
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 1.7e-23 113.6 208 46.2
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 3.0e-23 112.8 145 49.0
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 3.0e-23 112.8 209 47.4
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 3.9e-23 112.5 135 50.4
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 3.9e-23 112.5 135 50.4
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 3.9e-23 112.5 93 64.5
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 5.1e-23 112.1 150 48.7
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 5.1e-23 112.1 203 45.3
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 6.6e-23 111.7 140 49.3
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 1.1e-22 110.9 141 50.4
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 1.5e-22 110.5 206 45.6
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 1.9e-22 110.2 137 50.4
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 1.9e-22 110.2 169 47.9
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 2.5e-22 109.8 190 47.9
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 3.3e-22 109.4 131 51.1
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 3.3e-22 109.4 151 51.0
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 3.3e-22 109.4 139 53.2
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 4.3e-22 109.0 132 53.0
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 1.2e-21 107.5 141 49.6
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 1.2e-21 107.5 143 50.3
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 1.6e-21 107.1 138 50.7
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 2.8e-21 106.3 134 51.5
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 2.8e-21 106.3 149 48.3
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.6e-21 105.9 150 51.3
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 3.6e-21 105.9 144 47.9
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 3.6e-21 105.9 123 54.5
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 8.1e-21 104.8 150 50.0
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 8.1e-21 104.8 148 45.3
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 8.1e-21 104.8 82 67.1
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 1.1e-20 104.4 136 50.7
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 1.1e-20 104.4 136 50.7
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 1.4e-20 104.0 143 47.6
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.1e-20 102.8 134 52.2
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 3.1e-20 102.8 193 45.6
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 6.9e-20 101.7 157 47.1
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 9.0e-20 101.3 184 39.1
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 1.5e-19 100.5 135 47.4
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 2.6e-19 99.8 148 48.0
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 5.8e-19 98.6 82 67.1
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 7.6e-19 98.2 104 56.7
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 9.9e-19 97.8 86 66.3
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 2.9e-18 96.3 144 43.8
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 3.8e-18 95.9 201 42.8
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 3.8e-18 95.9 149 45.6
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 3.8e-18 95.9 85 61.2
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 4.9e-18 95.5 88 62.5
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 4.9e-18 95.5 126 47.6
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 8.4e-18 94.7 82 63.4
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 8.4e-18 94.7 82 63.4
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 8.4e-18 94.7 82 63.4
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.4e-17 94.0 132 47.0
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 2.4e-17 93.2 85 62.4
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 2.4e-17 93.2 81 63.0
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 2.4e-17 93.2 81 63.0
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.4e-17 93.2 125 52.0
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 3.2e-17 92.8 61 83.6
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 3.2e-17 92.8 134 44.0
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 4.2e-17 92.4 126 46.8
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 7.1e-17 91.7 97 51.5
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 2.1e-16 90.1 96 55.2
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 2.7e-16 89.7 126 46.0
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 3.5e-16 89.4 126 46.0
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 3.5e-16 89.4 126 46.0
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 3.5e-16 89.4 126 46.0
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 7.8e-16 88.2 92 54.3
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 7.8e-16 88.2 92 54.3
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 1.7e-15 87.0 92 53.3
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.3e-15 86.7 72 62.5
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 2.3e-15 86.7 75 60.0
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 3.0e-15 86.3 161 41.6
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 1.5e-14 84.0 61 70.5
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 5.6e-14 82.0 186 38.7
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 2.1e-13 80.1 63 65.1
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.2e-11 74.3 61 62.3
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 2.6e-11 73.2 128 43.8
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 9.9e-11 71.2 53 67.9
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 1.7e-10 70.5 75 56.0
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 2.2e-10 70.1 123 41.5
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 3.8e-10 69.3 62 61.3
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.8e-10 69.3 62 59.7
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.6e-08 63.9 125 48.0
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.8e-07 60.5 79 48.1
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 2.3e-07 60.1 142 35.2
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 5.1e-07 58.9 100 41.0


User provided reference genes

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