Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 8.1e-291 1003.0 517 100.0
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.4e-258 896.0 520 89.2
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.8e-258 895.6 517 88.8
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 1.7e-256 889.0 517 89.0
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 7.2e-239 830.5 521 82.7
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.0e-221 773.5 400 98.5
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 1.7e-216 756.1 528 73.5
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 6.1e-214 747.7 524 74.4
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 3.1e-210 735.3 533 72.6
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.6e-209 733.0 536 70.5
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.0e-209 732.6 528 71.8
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 1.7e-208 729.6 522 72.4
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 5.0e-208 728.0 519 71.9
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 5.0e-208 728.0 531 71.9
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 3.3e-207 725.3 526 71.7
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 4.3e-207 724.9 519 72.1
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 4.3e-207 724.9 525 72.6
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 4.3e-207 724.9 523 71.3
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.6e-206 723.0 536 70.0
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 1.6e-206 723.0 528 71.2
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 1.0e-205 720.3 523 71.1
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 3.0e-205 718.8 527 71.9
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 4.0e-205 718.4 527 70.8
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 1.5e-204 716.5 527 71.7
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 1.5e-204 716.5 519 71.5
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 2.0e-204 716.1 524 71.0
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 3.5e-201 705.3 431 79.8
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 7.8e-201 704.1 526 70.3
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 7.8e-201 704.1 433 81.3
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 8.6e-200 700.7 519 70.1
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.9e-199 699.5 523 69.6
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 4.3e-199 698.4 523 69.4
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.2e-198 696.8 527 69.6
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 2.8e-198 695.7 525 69.1
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 2.3e-197 692.6 476 73.7
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 5.2e-197 691.4 552 67.6
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 8.9e-197 690.6 522 69.3
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 8.9e-197 690.6 522 69.3
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.2e-196 690.3 469 73.8
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.5e-196 689.9 521 69.5
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 2.0e-196 689.5 453 76.2
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 2.6e-196 689.1 476 71.8
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 3.4e-196 688.7 522 69.0
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 9.8e-196 687.2 548 67.3
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 9.8e-196 687.2 518 69.5
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 9.8e-196 687.2 527 67.9
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.7e-195 686.4 524 69.3
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 2.2e-195 686.0 530 67.5
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 2.9e-195 685.6 524 69.5
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.9e-194 682.9 483 71.8
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 4.1e-194 681.8 523 68.1
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 5.4e-194 681.4 523 67.9
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 7.0e-194 681.0 541 66.2
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 1.2e-193 680.2 433 78.3
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 1.0e-192 677.2 533 67.2
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.3e-192 676.8 523 68.1
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.1e-191 673.7 535 66.4
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 1.9e-191 672.9 525 67.8
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 1.4e-189 666.8 523 67.3
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.8e-189 666.4 536 65.9
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 6.8e-189 664.5 527 66.2
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 8.9e-189 664.1 528 66.1
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 2.6e-188 662.5 401 81.5
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 6.4e-187 657.9 528 66.1
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 9.2e-186 654.1 443 72.2
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 1.2e-185 653.7 528 65.2
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 2.8e-182 642.5 528 64.4
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 2.4e-181 639.4 526 64.6
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 3.1e-181 639.0 528 63.8
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 4.0e-181 638.6 550 61.6
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 8.9e-181 637.5 531 64.4
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 1.1e-178 630.6 520 64.4
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 9.2e-178 627.5 522 63.6
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.2e-177 627.1 525 63.2
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 2.7e-177 625.9 522 63.8
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 2.7e-177 625.9 806 47.4
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 4.6e-177 625.2 525 62.7
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 4.6e-177 625.2 525 62.7
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 4.6e-177 625.2 528 63.1
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 7.8e-177 624.4 545 60.4
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 1.0e-176 624.0 526 62.7
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 1.0e-176 624.0 544 60.5
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 1.3e-176 623.6 522 63.4
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 1.3e-176 623.6 522 63.0
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 1.7e-176 623.2 528 63.6
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 4.3e-175 618.6 520 62.5
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 1.6e-174 616.7 527 62.0
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 2.8e-174 615.9 541 61.2
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 4.6e-169 598.6 410 71.7
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 1.7e-168 596.7 392 75.3
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 2.5e-167 592.8 403 73.0
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 2.1e-166 589.7 403 72.5
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.4e-165 587.0 529 61.8
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.9e-163 579.3 482 64.7
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 6.4e-163 578.2 473 64.1
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 1.9e-159 566.6 448 63.6
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 3.3e-159 565.8 554 57.8
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 7.4e-159 564.7 382 73.3
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 7.4e-159 564.7 453 62.9
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 1.3e-158 563.9 511 59.9
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 1.5e-156 557.0 498 60.8
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 2.0e-156 556.6 558 55.7
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 4.5e-156 555.4 484 63.2
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 5.8e-156 555.1 423 69.5
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 8.4e-155 551.2 412 68.7
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 5.3e-149 531.9 553 54.8
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 4.1e-141 505.8 516 53.7
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 7.6e-140 501.5 522 57.1
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 1.4e-138 497.3 458 58.7
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 4.2e-130 469.2 438 55.5
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 2.1e-129 466.8 538 50.4
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 3.4e-124 449.5 468 50.9
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 2.6e-119 433.3 409 57.5
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 2.0e-116 423.7 449 52.3
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 5.5e-114 415.6 552 45.8
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 3.1e-93 346.7 438 45.7
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 2.1e-89 334.0 279 66.7
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 5.8e-87 325.9 443 42.2
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 1.3e-86 324.7 216 73.1
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 1.7e-86 324.3 299 56.9
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 6.0e-84 315.8 400 49.8
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 1.1e-80 305.1 365 47.9
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 1.2e-76 291.6 232 69.0
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 1.6e-76 291.2 502 37.1
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 1.2e-60 238.4 187 65.2
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 3.3e-58 230.3 445 40.2
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 1.7e-54 218.0 116 97.4
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.1e-53 215.3 159 64.2
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 5.4e-53 213.0 158 67.1
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 7.3e-50 202.6 267 44.2
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.7e-46 191.4 264 43.9
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 6.4e-46 189.5 246 45.1
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 2.9e-38 164.1 121 68.6
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 8.4e-38 162.5 130 73.1
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.6e-36 158.3 114 70.2
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.7e-36 157.5 259 40.9
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 3.0e-35 154.1 250 41.6
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 6.7e-35 152.9 135 63.0
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-34 152.1 135 62.2
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 1.1e-34 152.1 122 63.1
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 3.3e-34 150.6 243 41.6
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 5.6e-34 149.8 171 53.8
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-33 148.7 373 30.8
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 6.2e-33 146.4 97 73.2
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 1.2e-31 142.1 116 63.8
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 1.0e-30 139.0 100 66.0
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.7e-28 131.0 135 52.6
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 6.7e-27 126.3 149 50.3
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 5.3e-24 116.7 79 72.2
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 1.5e-23 115.2 134 53.7
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 3.8e-22 110.5 221 36.7
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 5.0e-22 110.2 221 36.7
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 3.6e-20 104.0 235 34.5
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 7.9e-20 102.8 98 60.2
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 1.5e-15 88.6 153 34.0
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 2.6e-15 87.8 94 43.6
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 4.5e-15 87.0 63 63.5
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.0e-14 85.9 63 63.5
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 1.8e-11 75.1 56 64.3
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 8.8e-11 72.8 68 54.4
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 4.8e-09 67.0 254 28.3
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 3.5e-07 60.8 37 81.1
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 3.5e-07 60.8 37 81.1
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 3.5e-07 60.8 37 81.1
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 1.0e-06 59.3 38 65.8
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 1.0e-06 59.3 38 65.8
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 1.0e-06 59.3 38 65.8
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 1.0e-06 59.3 38 65.8
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 1.7e-06 58.5 43 69.8
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 5.0e-06 57.0 78 42.3


User provided reference genes

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