Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 2.1e-192 675.6 369 100.0
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 1.7e-186 656.0 369 97.3
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 2.7e-147 525.8 389 78.7
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 4.3e-145 518.5 402 76.4
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 2.1e-144 516.2 424 72.6
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 9.7e-121 437.6 436 61.9
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 2.2e-117 426.4 316 76.6
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 1.4e-116 423.7 369 67.8
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.9e-116 423.3 369 67.8
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 7.2e-116 421.4 413 62.0
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 1.2e-115 420.6 443 60.3
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.0e-114 417.5 427 60.0
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 1.4e-114 417.2 302 77.5
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 1.8e-114 416.8 441 60.1
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.3e-114 416.4 302 77.2
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 3.9e-114 415.6 317 72.6
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 5.1e-114 415.2 459 57.5
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 8.8e-114 414.5 424 61.8
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 1.5e-113 413.7 315 74.9
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.0e-113 413.3 362 67.7
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 4.4e-113 412.1 413 60.8
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 5.7e-113 411.8 430 59.5
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.3e-112 410.6 427 59.0
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 1.3e-112 410.6 442 59.3
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 1.1e-111 407.5 424 60.1
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 2.4e-111 406.4 319 73.4
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 4.1e-111 405.6 458 55.9
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 1.2e-110 404.1 422 60.2
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 2.0e-110 403.3 290 78.6
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 1.3e-109 400.6 311 71.4
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 5.0e-109 398.7 319 72.4
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 6.5e-109 398.3 369 65.9
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 2.5e-108 396.4 409 60.6
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 4.2e-108 395.6 432 59.0
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 7.2e-108 394.8 431 58.5
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 3.6e-107 392.5 431 58.0
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 6.1e-107 391.7 273 79.9
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 1.0e-106 391.0 400 59.8
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 1.0e-106 391.0 288 75.0
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 1.4e-106 390.6 396 60.4
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 1.4e-106 390.6 394 60.9
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 1.8e-106 390.2 430 57.9
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 3.0e-106 389.4 308 71.8
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 3.0e-106 389.4 308 71.8
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 2.0e-105 386.7 372 65.1
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 4.4e-105 385.6 413 59.1
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 2.2e-104 383.3 308 70.8
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 2.2e-104 383.3 421 58.9
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 3.7e-104 382.5 430 58.4
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 3.7e-104 382.5 326 67.8
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 4.8e-104 382.1 399 58.9
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 4.8e-104 382.1 414 57.7
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 6.3e-104 381.7 366 63.4
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 1.1e-103 380.9 412 59.2
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 1.1e-103 380.9 413 58.1
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 1.8e-103 380.2 379 61.7
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 1.2e-102 377.5 386 61.4
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 1.2e-102 377.5 386 61.4
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 2.0e-102 376.7 400 59.8
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 3.5e-102 375.9 298 71.8
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 5.9e-102 375.2 305 70.8
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 2.9e-101 372.9 427 55.7
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 2.9e-101 372.9 381 60.4
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 2.1e-99 366.7 418 56.5
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 4.7e-99 365.5 315 68.3
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 6.1e-99 365.2 436 55.0
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 1.4e-98 364.0 297 70.4
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.4e-98 364.0 446 54.5
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 6.8e-98 361.7 399 57.1
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 8.8e-98 361.3 309 68.6
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 1.5e-97 360.5 403 57.8
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 2.2e-96 356.7 308 68.8
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 2.8e-96 356.3 289 72.3
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 2.4e-95 353.2 289 69.6
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 1.3e-93 347.4 366 58.5
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 3.8e-93 345.9 306 63.4
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 6.5e-93 345.1 417 54.7
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 4.2e-92 342.4 307 65.8
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 9.4e-92 341.3 484 49.0
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 1.6e-91 340.5 438 52.5
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 3.6e-91 339.3 331 60.4
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 7.5e-89 331.6 464 49.6
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 7.5e-89 331.6 413 50.1
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 2.7e-86 323.2 342 59.4
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 8.6e-85 318.2 413 50.6
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 1.8e-82 310.5 389 49.6
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 2.0e-81 307.0 432 50.7
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 2.0e-78 297.0 314 58.9
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 3.3e-76 289.7 255 66.7
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 3.3e-76 289.7 314 59.6
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 1.6e-75 287.3 314 58.9
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 2.1e-75 287.0 393 49.4
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 2.3e-74 283.5 266 63.9
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 5.2e-74 282.3 295 59.3
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 2.2e-72 276.9 319 55.8
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 3.7e-72 276.2 295 58.6
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 4.1e-71 272.7 303 52.1
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.6e-70 270.8 309 56.3
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 9.5e-68 261.5 444 44.8
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.6e-67 260.8 406 47.8
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 6.2e-67 258.8 447 43.2
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 1.8e-66 257.3 220 67.7
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 6.8e-66 255.4 435 44.8
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.6e-62 244.2 317 51.4
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 1.2e-59 234.6 251 52.2
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 2.2e-56 223.8 439 41.5
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 2.7e-54 216.9 302 49.7
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 9.6e-52 208.4 309 41.7
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 2.4e-50 203.8 284 46.1
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 2.6e-41 173.7 356 40.2
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 3.2e-39 166.8 322 41.6
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 2.5e-36 157.1 297 37.7
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 2.4e-31 140.6 165 53.9
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 1.3e-29 134.8 234 40.6
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 1.8e-29 134.4 465 31.4
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 3.7e-27 126.7 89 75.3
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 6.5e-24 115.9 90 66.7
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 6.5e-24 115.9 90 66.7
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 7.1e-23 112.5 164 49.4
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 2.1e-22 110.9 96 67.7
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 2.1e-22 110.9 108 61.1
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 1.5e-20 104.8 190 41.1
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 4.5e-17 93.2 258 33.7
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 7.1e-15 85.9 153 41.8
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 1.2e-14 85.1 87 56.3
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 7.4e-12 75.9 238 32.8
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 4.8e-11 73.2 50 76.0
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 1.1e-07 62.0 77 50.6


User provided reference genes

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