Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 1.0e-111 406.8 201 100.0
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 6.1e-101 370.9 183 99.5
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 8.2e-82 307.4 212 78.3
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 3.2e-78 295.4 237 70.0
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 1.8e-73 279.6 224 67.0
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 4.1e-73 278.5 211 70.6
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 4.1e-73 278.5 211 70.6
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 9.1e-73 277.3 213 69.5
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 7.7e-72 274.2 210 69.5
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 1.7e-71 273.1 211 71.1
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 1.1e-70 270.4 213 70.9
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 1.1e-70 270.4 210 69.0
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 2.7e-69 265.8 214 68.7
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 8.0e-69 264.2 204 69.1
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 1.8e-68 263.1 214 67.8
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 4.0e-68 261.9 214 67.3
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 1.2e-67 260.4 203 70.4
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 1.5e-67 260.0 212 67.0
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 1.5e-67 260.0 215 66.0
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 7.5e-67 257.7 214 66.4
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 1.7e-66 256.5 220 64.5
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 1.7e-66 256.5 207 66.7
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 2.2e-66 256.1 212 69.3
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 2.2e-66 256.1 223 63.7
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 3.7e-66 255.4 209 67.5
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 6.3e-66 254.6 208 65.9
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 2.4e-65 252.7 208 67.8
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 3.1e-65 252.3 206 66.0
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 3.1e-65 252.3 206 67.0
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 7.0e-65 251.1 209 63.2
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 1.2e-64 250.4 212 65.6
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 2.0e-64 249.6 215 67.9
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 2.0e-64 249.6 218 62.8
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 4.5e-64 248.4 205 67.3
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 1.0e-63 247.3 215 64.7
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 1.3e-63 246.9 224 62.5
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 1.3e-63 246.9 208 66.3
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 2.3e-63 246.1 208 64.9
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 3.8e-63 245.4 209 64.6
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 3.8e-63 245.4 227 62.6
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 5.0e-63 245.0 206 65.0
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 5.0e-63 245.0 213 62.9
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 8.6e-63 244.2 209 65.6
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 1.5e-62 243.4 206 64.6
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 2.5e-62 242.7 216 61.6
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 5.5e-62 241.5 211 63.0
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 9.5e-62 240.7 218 60.6
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 1.2e-61 240.4 209 64.1
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 1.2e-61 240.4 205 65.4
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.6e-61 240.0 212 62.7
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 2.8e-61 239.2 218 61.5
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 2.8e-61 239.2 207 65.7
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 2.8e-61 239.2 207 65.7
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 3.6e-61 238.8 252 56.7
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 6.1e-61 238.0 162 77.8
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 1.8e-60 236.5 148 81.8
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 3.0e-60 235.7 204 64.7
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 4.0e-60 235.3 209 62.2
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 4.0e-60 235.3 223 60.1
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 5.2e-60 235.0 198 68.2
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 6.8e-60 234.6 207 62.8
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 8.9e-60 234.2 215 61.9
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 1.2e-59 233.8 210 63.8
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 1.2e-59 233.8 201 63.2
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 1.5e-59 233.4 209 62.2
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 2.0e-59 233.0 224 60.3
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 2.0e-59 233.0 202 62.4
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 2.6e-59 232.6 205 60.0
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 2.6e-59 232.6 213 61.5
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 5.7e-59 231.5 213 60.1
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 5.7e-59 231.5 201 64.7
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 5.7e-59 231.5 276 52.2
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 7.5e-59 231.1 209 61.7
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 9.8e-59 230.7 213 59.6
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 9.8e-59 230.7 206 61.7
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 9.8e-59 230.7 213 59.6
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 9.8e-59 230.7 213 59.6
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 9.8e-59 230.7 209 60.3
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 1.3e-58 230.3 258 53.9
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 1.7e-58 229.9 216 61.1
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 2.8e-58 229.2 207 61.8
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 3.7e-58 228.8 234 57.3
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 4.9e-58 228.4 209 61.2
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 4.9e-58 228.4 205 59.5
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 4.9e-58 228.4 209 62.2
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 6.3e-58 228.0 203 60.6
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 6.3e-58 228.0 230 58.7
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 6.3e-58 228.0 211 59.2
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 8.3e-58 227.6 221 59.7
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 1.1e-57 227.3 203 59.6
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 1.4e-57 226.9 216 59.3
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 1.8e-57 226.5 218 59.2
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 2.4e-57 226.1 235 56.6
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 3.1e-57 225.7 152 75.7
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 9.2e-57 224.2 286 49.7
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 2.0e-56 223.0 201 64.2
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 2.0e-56 223.0 179 66.5
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 2.7e-56 222.6 190 63.2
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.0e-55 220.7 130 84.6
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 3.8e-55 218.8 211 62.1
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 5.0e-55 218.4 194 63.9
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 6.6e-55 218.0 186 63.4
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 2.5e-54 216.1 203 58.6
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 9.5e-54 214.2 182 62.1
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 1.6e-53 213.4 194 60.8
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 3.6e-53 212.2 228 57.0
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 1.4e-52 210.3 165 66.7
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.4e-52 210.3 208 59.6
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 3.1e-52 209.1 153 68.6
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 2.0e-51 206.5 215 54.0
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 2.6e-51 206.1 201 58.2
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 4.4e-51 205.3 203 58.1
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 5.8e-51 204.9 190 60.0
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 7.5e-51 204.5 188 61.7
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 1.3e-50 203.8 187 57.8
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 3.7e-50 202.2 120 85.0
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 4.9e-50 201.8 203 59.6
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 8.3e-50 201.1 197 56.9
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 2.4e-49 199.5 217 53.5
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 5.4e-49 198.4 143 67.8
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.6e-48 196.8 215 49.3
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 1.0e-47 194.1 189 59.3
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.1e-46 190.7 162 63.0
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 2.5e-46 189.5 160 62.5
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 4.7e-45 185.3 187 55.6
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 4.0e-44 182.2 160 63.1
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.2e-43 180.6 163 62.6
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 1.5e-43 180.3 175 57.1
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 5.8e-43 178.3 166 61.4
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 6.4e-42 174.9 144 63.9
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 4.1e-41 172.2 170 56.5
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 7.8e-40 167.9 208 51.9
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 3.0e-39 166.0 131 65.6
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 6.6e-39 164.9 146 61.6
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 6.6e-39 164.9 133 60.2
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 8.6e-39 164.5 137 62.8
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 3.3e-38 162.5 139 61.9
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 2.1e-37 159.8 194 49.5
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 4.7e-37 158.7 201 49.8
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 3.1e-36 156.0 110 72.7
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 3.1e-36 156.0 137 59.1
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 1.2e-35 154.1 138 55.1
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 5.4e-33 145.2 103 70.9
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 2.2e-26 123.2 223 39.5
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 1.1e-25 120.9 132 47.0
RcHm_v2.0_Chr3g0491761 Rosa chinensis HOM05D002231 ORTHO05D006103 2.4e-20 103.2 62 83.9
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 1.4e-17 94.0 174 35.1
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 1.6e-16 90.5 88 52.3
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.0e-15 87.8 74 67.6
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 2.5e-14 83.2 116 37.9
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 7.1e-09 65.1 38 78.9
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 2.7e-08 63.2 35 91.4
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 1.3e-07 60.8 39 69.2


User provided reference genes

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