Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 5.6e-267 923.7 460 100.0
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 1.4e-246 855.9 429 98.8
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 7.8e-229 797.0 453 86.5
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 1.2e-224 783.1 445 86.3
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 2.0e-224 782.3 445 86.1
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 9.3e-222 773.5 444 84.5
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 5.6e-219 764.2 451 84.3
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 2.4e-217 758.8 451 82.3
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 1.4e-214 749.6 463 80.8
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 9.3e-214 746.9 450 80.2
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 9.3e-214 746.9 448 80.8
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 2.7e-213 745.3 452 80.8
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 1.3e-212 743.0 445 80.7
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 1.8e-212 742.7 450 79.1
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 5.1e-212 741.1 433 81.8
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 6.7e-212 740.7 458 79.0
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 6.7e-212 740.7 453 80.8
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 8.7e-212 740.3 458 78.4
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 8.7e-212 740.3 452 80.5
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 1.1e-211 740.0 450 79.3
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 3.3e-211 738.4 451 79.8
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 4.3e-211 738.0 450 78.7
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 4.3e-211 738.0 450 79.1
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 5.6e-211 737.6 450 79.1
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 7.4e-211 737.3 417 85.9
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 1.3e-210 736.5 458 79.9
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 2.8e-210 735.3 476 75.8
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 1.1e-209 733.4 439 80.4
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 1.4e-209 733.0 477 76.3
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 6.9e-209 730.7 451 80.0
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 1.2e-208 729.9 451 79.6
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 2.6e-208 728.8 447 78.1
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 3.4e-208 728.4 452 77.7
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 3.4e-208 728.4 451 79.2
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 3.4e-208 728.4 461 77.2
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 5.8e-208 727.6 455 78.5
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 1.3e-207 726.5 456 77.4
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 1.3e-207 726.5 454 78.6
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 1.3e-207 726.5 472 75.2
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 1.7e-207 726.1 455 78.0
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 2.2e-207 725.7 450 78.2
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 2.9e-207 725.3 481 75.3
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 3.8e-207 724.9 452 77.0
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 1.1e-206 723.4 446 78.3
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 4.2e-206 721.5 448 77.9
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.2e-205 719.9 451 79.2
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.2e-205 719.9 449 78.8
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 1.6e-205 719.5 452 78.1
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 6.0e-205 717.6 450 78.0
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 1.0e-204 716.8 456 76.5
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 2.3e-204 715.7 451 78.5
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 2.3e-204 715.7 453 77.7
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 5.1e-204 714.5 456 75.7
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 6.7e-204 714.1 457 77.0
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 1.9e-203 712.6 449 77.1
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 1.9e-203 712.6 455 76.7
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 1.9e-203 712.6 450 75.8
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 3.3e-203 711.8 454 76.0
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 5.7e-203 711.1 433 80.1
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 9.6e-203 710.3 452 76.3
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 1.6e-202 709.5 451 73.8
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 2.4e-201 705.7 445 78.4
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 1.5e-200 703.0 447 74.7
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 2.9e-199 698.7 454 74.4
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 8.4e-199 697.2 462 71.6
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 5.5e-198 694.5 448 73.4
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 7.2e-198 694.1 448 72.5
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 9.3e-198 693.7 446 74.2
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 2.7e-197 692.2 454 74.2
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 3.6e-197 691.8 451 74.1
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 1.3e-196 689.9 448 73.2
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 1.8e-196 689.5 448 75.0
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 5.7e-195 684.5 467 70.0
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 1.3e-194 683.3 448 73.7
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 1.6e-194 682.9 448 74.8
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 2.2e-194 682.6 447 72.3
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 6.3e-194 681.0 449 72.6
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 1.4e-193 679.9 462 74.0
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 3.1e-193 678.7 451 75.2
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 5.3e-193 677.9 448 72.3
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 4.5e-192 674.9 459 70.6
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 4.5e-192 674.9 448 71.7
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 4.5e-192 674.9 459 71.0
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 5.9e-192 674.5 449 72.2
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 5.9e-192 674.5 426 74.9
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 2.9e-191 672.2 500 70.2
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 1.4e-190 669.8 447 73.4
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 2.7e-189 665.6 468 68.6
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 6.1e-189 664.5 477 67.7
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 1.4e-188 663.3 481 71.1
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 1.8e-188 662.9 490 68.0
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 1.1e-187 660.2 412 78.4
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 1.4e-185 653.3 446 71.3
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 1.0e-183 647.1 406 79.1
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 7.2e-182 641.0 428 69.6
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 1.1e-177 627.1 396 73.0
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 7.2e-174 614.4 408 74.0
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 2.1e-173 612.8 412 71.4
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 2.7e-173 612.5 379 80.5
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 1.7e-170 603.2 452 67.7
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 5.3e-169 598.2 465 65.2
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 1.0e-167 594.0 457 65.2
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 1.0e-167 594.0 450 66.0
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 6.5e-159 564.7 438 60.7
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 5.5e-158 561.6 429 62.2
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 1.0e-156 557.4 430 60.9
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 1.0e-156 557.4 434 62.4
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 1.2e-155 553.9 320 83.1
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 1.9e-150 536.6 443 56.9
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 1.5e-134 483.8 454 58.1
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 1.2e-133 480.7 277 81.2
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 2.4e-121 439.9 447 55.9
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 6.9e-116 421.8 448 46.0
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 9.9e-107 391.3 444 45.9
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 2.9e-98 363.2 315 61.3
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 1.9e-97 360.5 369 54.7
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 8.4e-90 335.1 182 86.8
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 1.1e-86 324.7 486 37.9
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 3.9e-63 246.5 188 69.7
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 4.8e-61 239.6 358 41.1
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 3.3e-54 216.9 108 90.7
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 8.2e-53 212.2 372 39.5
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 4.4e-46 189.9 389 35.7
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 2.4e-44 184.1 125 76.8
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 3.5e-43 180.3 124 74.2
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 1.1e-36 158.7 137 61.3
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 1.6e-32 144.8 101 70.3
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 1.1e-28 132.1 85 65.9
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 2.5e-25 120.9 127 48.8
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 1.8e-23 114.8 83 67.5
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 1.4e-20 105.1 67 67.2
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 3.2e-20 104.0 222 29.7
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 3.5e-19 100.5 101 54.5
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 1.0e-18 99.0 120 50.8
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 5.0e-18 96.7 75 61.3
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 8.6e-18 95.9 66 68.2
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 4.3e-17 93.6 67 67.2
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 6.2e-16 89.7 56 78.6
arahy.Tifrunner.gnm1.ann1.V8UVVM Arachis hypogaea HOM05D005577 ORTHO05D086716 7.6e-06 56.2 43 65.1
VMungo0720G2142 Vigna mungo HOM05D008589 ORTHO05D010715 9.9e-06 55.8 71 42.3


User provided reference genes

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