Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g014760 Solanum pennellii HOM05D007558 ORTHO05D009245 5.2e-69 264.2 131 100.0
Solyc04g026250.1 Solanum lycopersicum HOM05D007558 ORTHO05D009245 3.7e-67 258.1 131 97.7
PGSC0003DMG400027920 Solanum tuberosum HOM05D007558 ORTHO05D009245 2.9e-59 231.9 130 91.5
Nitab4.5_0004636g0010 Nicotiana tabacum HOM05D007558 ORTHO05D009245 8.4e-35 150.6 130 69.2
Nitab4.5_0000034g0280 Nicotiana tabacum HOM05D007558 ORTHO05D009245 8.7e-32 140.6 127 66.1
CAN.G126.6 Capsicum annuum HOM05D007558 ORTHO05D009245 6.4e-27 124.4 115 64.3
Peaxi162Scf00710g00042 Petunia axillaris HOM05D020724 ORTHO05D009245 2.1e-17 92.8 128 46.1
Dinv15286 Davidia involucrata HOM05D000812 ORTHO05D000672 9.6e-15 84.0 118 45.8
Ciclev10032958m.g Citrus clementina HOM05D007558 ORTHO05D009245 7.6e-12 74.3 79 49.4
Nitab4.5_0005678g0020 Nicotiana tabacum HOM05D020724 ORTHO05D025910 7.6e-12 74.3 111 45.0
Nitab4.5_0000203g0180 Nicotiana tabacum HOM05D020724 ORTHO05D025910 1.7e-11 73.2 110 44.5
Hma1.2p1_0536F.1_g173970 Hydrangea macrophylla HOM05D007558 ORTHO05D009245 2.9e-11 72.4 96 50.0
CiPaw.06G071200 Carya illinoinensis HOM05D007558 ORTHO05D009245 3.8e-11 72.0 101 44.6
Glyma.08G286300 Glycine max HOM05D007558 ORTHO05D009245 3.8e-11 72.0 120 36.7
GSVIVG01013748001 Vitis vinifera HOM05D007558 ORTHO05D009245 6.5e-11 71.2 74 52.7
CSS0017958 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 8.4e-11 70.9 115 41.7
DCAR_007085 Daucus carota HOM05D007558 ORTHO05D009245 8.4e-11 70.9 103 45.6
Oeu056732.1 Olea europaea HOM05D007558 ORTHO05D009245 1.4e-10 70.1 148 39.2
Cfa009155 Carpinus fangiana HOM05D007558 ORTHO05D009245 1.9e-10 69.7 107 40.2
Phvul.003G060900 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 1.9e-10 69.7 92 44.6
QL03p060106 Quercus lobata HOM05D007558 ORTHO05D009245 1.9e-10 69.7 98 39.8
TWI18G1040 Tripterygium wilfordii HOM05D007558 ORTHO05D009245 1.9e-10 69.7 78 50.0
PGR102G1011 Punica granatum HOM05D007558 ORTHO05D009245 2.5e-10 69.3 86 47.7
SGA_v2.0_scaffold8G04208 Striga asiatica HOM05D007558 ORTHO05D009245 3.2e-10 68.9 122 42.6
DCAR_026537 Daucus carota HOM05D007558 ORTHO05D009245 4.2e-10 68.6 105 43.8
Lj4g0018280 Lotus japonicus HOM05D007558 ORTHO05D009245 9.3e-10 67.4 109 43.1
MSTRG.7902 Avicennia marina HOM05D007558 ORTHO05D009245 1.2e-09 67.0 119 39.5
FAN17G0543 Fragaria x ananassa HOM05D007558 ORTHO05D009245 1.6e-09 66.6 109 39.4
Gohir.A12G143200 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.6e-09 66.6 125 36.8
Gohir.D12G147900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.6e-09 66.6 125 36.8
Gorai.008G159200 Gossypium raimondii HOM05D007558 ORTHO05D009245 1.6e-09 66.6 125 36.8
Lj2g0015975 Lotus japonicus HOM05D007558 ORTHO05D009245 1.6e-09 66.6 95 41.1
FAN12G2944 Fragaria x ananassa HOM05D007558 ORTHO05D009245 2.1e-09 66.2 109 39.4
Duzib248G0521 Durio zibethinus HOM05D007558 ORTHO05D009245 2.7e-09 65.9 92 43.5
FvH4_4g34300 Fragaria vesca HOM05D007558 ORTHO05D009245 2.7e-09 65.9 110 40.0
Potri.010G041600 Populus trichocarpa HOM05D007558 ORTHO05D009245 2.7e-09 65.9 97 44.3
TPR.G11688 Trifolium pratense HOM05D007558 ORTHO05D009245 2.7e-09 65.9 131 35.9
FAN22G1900 Fragaria x ananassa HOM05D007558 ORTHO05D009245 3.5e-09 65.5 110 40.0
Lalb_Chr09g0334981 Lupinus albus HOM05D007558 ORTHO05D009245 6.1e-09 64.7 112 34.8
MD16G1094000 Malus domestica HOM05D007558 ORTHO05D009245 6.1e-09 64.7 131 36.6
RcHm_v2.0_Chr4g0443731 Rosa chinensis HOM05D007558 ORTHO05D009245 6.1e-09 64.7 114 39.5
Thecc.02G251400 Theobroma cacao HOM05D007558 ORTHO05D009245 6.1e-09 64.7 70 51.4
Nn4g22760 Nelumbo nucifera HOM05D007558 ORTHO05D009245 7.9e-09 64.3 85 45.9
TPR.G11726 Trifolium pratense HOM05D007558 ORTHO05D009245 7.9e-09 64.3 129 36.4
Duzib268G0018 Durio zibethinus HOM05D007558 ORTHO05D009245 1.3e-08 63.5 95 44.2
FAN07G0793 Fragaria x ananassa HOM05D007558 ORTHO05D009245 1.3e-08 63.5 111 39.6
CSS0045389 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 1.8e-08 63.2 146 37.0
COL.COLO4_24179 Corchorus olitorius HOM05D007558 ORTHO05D009245 1.8e-08 63.2 73 49.3
Medtr5g034200 Medicago truncatula HOM05D007558 ORTHO05D009245 1.8e-08 63.2 86 43.0
MD13G1093000 Malus domestica HOM05D007558 ORTHO05D009245 3.9e-08 62.0 113 38.1
Psat4g124320 Pisum sativum HOM05D007558 ORTHO05D009245 3.9e-08 62.0 106 34.0
TAR374G1667 Trochodendron aralioides HOM05D007558 ORTHO05D009245 3.9e-08 62.0 107 38.3
ECA233G1669 Erigeron canadensis HOM05D007558 ORTHO05D009245 5.1e-08 61.6 113 37.2
VMungo0251G2708 Vigna mungo HOM05D007558 ORTHO05D009245 5.1e-08 61.6 140 35.0
CANSAT01G1746 Cannabis sativa HOM05D007558 ORTHO05D009245 6.7e-08 61.2 68 47.1
Manes.12G027900 Manihot esculenta HOM05D007558 ORTHO05D009245 6.7e-08 61.2 106 37.7
CiPaw.05G151900 Carya illinoinensis HOM05D007558 ORTHO05D009245 1.1e-07 60.5 102 41.2
Actinidia08162 Actinidia chinensis HOM05D007558 ORTHO05D009245 1.5e-07 60.1 97 36.1
Lsat_1_v5_gn_4_5541 Lactuca sativa HOM05D007558 ORTHO05D009245 1.5e-07 60.1 101 40.6
Prupe.1G252500 Prunus persica HOM05D007558 ORTHO05D009245 1.9e-07 59.7 133 34.6
THA.LOC104822151 Tarenaya hassleriana HOM05D008527 ORTHO05D010701 2.5e-07 59.3 91 41.8
Ah.03g132750 Amaranthus hybridus HOM05D023191 ORTHO05D009245 4.3e-07 58.5 66 45.5
Ah.02g129970 Amaranthus hybridus HOM05D023191 ORTHO05D009245 5.7e-07 58.2 51 47.1
Lsat_1_v5_gn_8_155581 Lactuca sativa HOM05D007558 ORTHO05D009245 5.7e-07 58.2 120 36.7
MSTRG.591 Avicennia marina HOM05D007558 ORTHO05D009245 7.4e-07 57.8 99 41.4
Migut.L01422 Erythranthe guttata HOM05D007558 ORTHO05D009245 7.4e-07 57.8 61 49.2
Gohir.A03G139000 Gossypium hirsutum HOM05D007558 ORTHO05D009245 7.4e-07 57.8 101 39.6
Gohir.D02G161900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 9.7e-07 57.4 101 40.6
ECA234G1002 Erigeron canadensis HOM05D007558 ORTHO05D009245 1.3e-06 57.0 98 39.8
Glyma.02G035400 Glycine max HOM05D007558 ORTHO05D009245 1.3e-06 57.0 49 51.0
Gohir.A04G135600 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.3e-06 57.0 124 35.5
Nn3g16851 Nelumbo nucifera HOM05D007558 ORTHO05D009245 1.6e-06 56.6 74 45.9
Phvul.002G070800 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 1.6e-06 56.6 49 51.0
VMungo1215G0509 Vigna mungo HOM05D007558 ORTHO05D009245 1.6e-06 56.6 96 39.6
Aa31LG4G10480 Aethionema arabicum HOM05D008527 ORTHO05D010701 2.2e-06 56.2 83 43.4
MELO3C011993.2 Cucumis melo HOM05D007558 ORTHO05D009245 2.8e-06 55.8 83 45.8
Lalb_Chr05g0216831 Lupinus albus HOM05D007558 ORTHO05D009245 2.8e-06 55.8 126 33.3
unitig_26.g10360 Utricularia gibba HOM05D007558 ORTHO05D009245 2.8e-06 55.8 46 60.9
Gorai.012G171800 Gossypium raimondii HOM05D007558 ORTHO05D009245 3.7e-06 55.5 103 38.8
Gohir.D04G178700 Gossypium hirsutum HOM05D007558 ORTHO05D009245 4.8e-06 55.1 103 38.8
A02p16540 Brassica napus HOM05D008527 ORTHO05D010701 8.2e-06 54.3 83 41.0
BolC2t08819H Brassica oleracea HOM05D008527 ORTHO05D010701 8.2e-06 54.3 83 41.0
BraA02t06712Z Brassica rapa HOM05D008527 ORTHO05D010701 8.2e-06 54.3 83 41.0
ClCG05G025370 Citrullus lanatus HOM05D007558 ORTHO05D009245 8.2e-06 54.3 82 43.9


User provided reference genes

Program Settings