Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 0.0e+00 1213.0 643 100.0
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 0.0e+00 1142.9 611 99.2
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 3.6e-296 1021.1 710 78.2
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 1.3e-261 906.4 646 76.2
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 2.4e-252 875.5 656 73.8
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 3.1e-247 858.6 655 73.1
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 6.8e-247 857.4 656 73.2
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 2.0e-246 855.9 640 74.1
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 4.6e-243 844.7 656 73.0
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 4.6e-243 844.7 642 74.3
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 4.3e-241 838.2 656 72.6
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 6.6e-234 814.3 602 73.4
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 6.2e-232 807.7 653 70.3
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 2.0e-230 802.7 760 63.7
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 2.6e-230 802.4 603 74.8
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 9.9e-230 800.4 659 68.6
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.7e-229 799.7 658 68.1
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 4.9e-229 798.1 663 71.0
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 1.9e-228 796.2 644 69.3
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 2.4e-228 795.8 665 67.7
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 3.2e-228 795.4 659 67.2
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 1.3e-226 790.0 661 68.5
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 1.3e-226 790.0 661 68.5
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 1.7e-226 789.6 657 67.9
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 2.3e-226 789.3 657 68.2
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 2.5e-225 785.8 685 63.4
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 5.6e-225 784.6 676 66.6
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 7.3e-225 784.3 654 68.2
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 7.3e-225 784.3 662 67.2
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 4.8e-224 781.6 644 68.8
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 5.8e-222 774.6 648 67.3
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 9.9e-222 773.9 650 67.7
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 1.3e-221 773.5 668 67.1
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 1.7e-221 773.1 658 66.4
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 4.9e-221 771.5 645 67.8
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 3.2e-220 768.8 657 67.6
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 5.4e-220 768.1 643 68.7
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 1.2e-219 766.9 632 68.5
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 2.7e-219 765.8 656 65.9
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 1.9e-217 759.6 659 65.7
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.9e-217 759.6 622 69.3
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.5e-217 759.2 646 66.9
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 2.5e-217 759.2 645 67.6
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 1.6e-216 756.5 642 67.6
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 6.9e-215 751.1 669 64.4
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 1.3e-213 746.9 663 66.4
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 6.5e-213 744.6 655 65.0
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 2.5e-212 742.7 713 62.1
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 5.5e-212 741.5 647 67.1
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.6e-211 740.0 666 64.3
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 3.5e-211 738.8 659 64.3
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.0e-210 737.3 669 64.9
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 1.3e-210 736.9 656 64.6
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 2.3e-210 736.1 648 65.9
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 3.9e-210 735.3 668 64.8
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 1.9e-209 733.0 654 65.7
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 4.3e-209 731.9 681 65.1
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.4e-207 726.9 647 66.5
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 3.1e-207 725.7 662 63.4
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 4.5e-206 721.8 654 63.5
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 1.0e-202 710.7 641 65.4
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 8.7e-202 707.6 618 65.5
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 1.3e-200 703.7 601 66.9
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 1.8e-199 699.9 652 62.9
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 2.4e-199 699.5 533 73.0
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 2.9e-197 692.6 647 63.5
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 3.8e-197 692.2 658 59.6
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 5.0e-197 691.8 654 61.6
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 5.0e-197 691.8 649 63.2
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 6.5e-197 691.4 623 63.9
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 7.9e-195 684.5 640 63.6
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 2.2e-192 676.4 647 62.3
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 2.8e-192 676.0 521 72.4
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 2.8e-192 676.0 662 61.6
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 6.3e-192 674.9 581 67.6
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 5.3e-191 671.8 638 62.7
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 1.2e-190 670.6 654 61.8
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 2.0e-190 669.8 457 79.4
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 2.0e-190 669.8 636 62.1
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 2.6e-190 669.5 646 61.9
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 2.6e-190 669.5 544 69.9
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 3.4e-190 669.1 637 62.8
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 3.4e-190 669.1 637 62.8
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 1.0e-189 667.5 493 75.9
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 1.1e-188 664.1 628 62.9
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 2.7e-187 659.4 638 61.4
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 2.7e-187 659.4 638 61.4
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 7.9e-187 657.9 637 61.4
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 5.1e-186 655.2 609 63.1
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 5.1e-186 655.2 636 60.8
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 5.1e-186 655.2 636 60.8
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 1.0e-181 641.0 637 60.9
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 4.7e-179 632.1 656 55.8
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 1.1e-175 620.9 637 56.4
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 3.0e-170 602.8 590 60.5
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 6.8e-170 601.7 509 68.6
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.0e-165 587.8 581 57.8
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 1.2e-163 580.9 641 55.4
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 8.0e-163 578.2 676 54.7
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 2.0e-161 573.5 630 57.1
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 2.3e-154 550.1 646 52.2
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 6.4e-152 542.0 410 74.9
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.8e-151 540.4 591 54.7
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 4.7e-147 525.8 638 53.9
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 6.2e-147 525.4 646 52.6
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 5.2e-146 522.3 445 63.1
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 7.3e-140 501.9 690 47.4
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 6.2e-139 498.8 310 92.9
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 1.3e-136 491.1 430 67.4
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 6.2e-123 445.7 564 49.3
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 4.9e-120 436.0 578 47.1
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 5.8e-113 412.5 663 43.6
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 2.5e-108 397.1 528 46.2
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 1.4e-106 391.3 486 53.9
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 5.3e-106 389.4 665 42.0
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 1.3e-101 374.8 560 45.7
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 6.3e-91 339.3 284 73.6
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 9.4e-79 298.9 315 60.6
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 4.7e-70 270.0 295 53.6
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.0e-68 264.6 180 85.6
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 4.4e-60 236.9 165 89.1
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.6e-52 211.1 302 49.7
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 1.8e-50 204.9 226 62.4
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 5.4e-50 203.4 274 49.3
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.0e-48 199.1 200 68.5
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 2.2e-48 198.0 143 74.1
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.5e-47 194.5 310 39.0
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 1.8e-45 188.3 299 40.8
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 9.2e-42 176.0 103 92.2
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.5e-41 174.1 284 38.0
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.2e-35 154.8 185 48.1
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 4.1e-34 150.6 83 83.1
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 1.2e-25 122.5 170 42.9
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.1e-23 115.9 89 75.3
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 2.8e-22 111.3 202 35.6
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 7.5e-20 103.2 311 27.7
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 2.2e-19 101.7 58 81.0
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 3.3e-15 87.8 120 49.2
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 2.8e-14 84.7 104 52.9
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 1.4e-13 82.4 108 38.0
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 1.4e-13 82.4 108 38.0
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.3e-13 81.6 228 32.0
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 4.0e-13 80.9 63 60.3
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 1.4e-10 72.4 53 62.3
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.6e-09 68.9 57 63.2
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.6e-09 68.9 57 63.2
Lsat_1_v5_gn_5_81581 Lactuca sativa HOM05D004640 ORTHO05D005489 4.3e-07 60.8 105 40.0
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 4.3e-07 60.8 164 26.8
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.2e-06 59.3 32 90.6
SHI16674 Sapria himalayana HOM05D004640 ORTHO05D005489 1.2e-06 59.3 35 71.4
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 2.1e-06 58.5 35 80.0
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 3.6e-06 57.8 36 83.3
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 6.2e-06 57.0 50 54.0
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 8.1e-06 56.6 34 85.3


User provided reference genes

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