Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g013660 Solanum pennellii HOM05D006394 ORTHO05D008057 1.3e-51 206.1 98 100.0
PGSC0003DMG400022563 Solanum tuberosum HOM05D006394 ORTHO05D008057 1.9e-39 165.6 96 82.3
Solyc03g033560.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 1.6e-38 162.5 92 83.7
Sopen03g006350 Solanum pennellii HOM05D006394 ORTHO05D008057 1.6e-38 162.5 92 83.7
CAN.G1735.1 Capsicum annuum HOM05D006394 ORTHO05D008057 1.1e-34 149.8 96 77.1
Peaxi162Scf00034g02720 Petunia axillaris HOM05D006394 ORTHO05D008057 5.0e-32 141.0 84 81.0
Nitab4.5_0006119g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 1.6e-30 136.0 90 77.8
Lj2C467T3 Lonicera japonica HOM05D006394 ORTHO05D008057 2.2e-27 125.6 88 70.5
Nitab4.5_0000438g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 2.4e-26 122.1 143 50.3
Hma1.2p1_0743F.1_g211600 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 4.5e-25 117.9 88 65.9
Actinidia22984 Actinidia chinensis HOM05D006394 ORTHO05D008057 5.2e-21 104.4 88 59.1
GSVIVG01018789001 Vitis vinifera HOM05D006394 ORTHO05D008057 1.1e-20 103.2 83 61.4
Actinidia28701 Actinidia chinensis HOM05D006394 ORTHO05D008057 9.7e-20 100.1 88 56.8
SalBow3G1310 Salvia bowleyana HOM05D006394 ORTHO05D008057 1.3e-19 99.8 89 58.4
Ciclev10025906m.g Citrus clementina HOM05D006394 ORTHO05D008057 2.2e-19 99.0 76 63.2
Prupe.7G167400 Prunus persica HOM05D006394 ORTHO05D008057 4.8e-19 97.8 89 58.4
DCAR_032392 Daucus carota HOM05D006394 ORTHO05D008057 6.3e-19 97.4 83 57.8
MD15G1246300 Malus domestica HOM05D006394 ORTHO05D008057 6.3e-19 97.4 89 57.3
CSS0039773 Camellia sinensis var. sinensis HOM05D006394 ORTHO05D008057 8.2e-19 97.1 89 57.3
Lsat_1_v5_gn_4_146641 Lactuca sativa HOM05D006394 ORTHO05D008057 8.2e-19 97.1 75 62.7
Duzib264G0144 Durio zibethinus HOM05D006394 ORTHO05D008057 1.4e-18 96.3 80 58.8
CiPaw.07G057900 Carya illinoinensis HOM05D006394 ORTHO05D008057 4.1e-18 94.7 85 60.0
Haze_03772 Corylus avellana HOM05D006394 ORTHO05D008057 4.1e-18 94.7 96 54.2
SGA_v2.0_scaffold137G35082 Striga asiatica HOM05D006394 ORTHO05D008057 4.1e-18 94.7 89 52.8
TPR.G30047 Trifolium pratense HOM05D006394 ORTHO05D008057 4.1e-18 94.7 83 59.0
Cpa.g.sc6.241 Carica papaya HOM05D006394 ORTHO05D008057 5.3e-18 94.4 94 53.2
Cc07_g10630 Coffea canephora HOM05D006394 ORTHO05D008057 9.1e-18 93.6 87 58.6
Potri.005G115100 Populus trichocarpa HOM05D006394 ORTHO05D008057 9.1e-18 93.6 89 52.8
QL06p032614 Quercus lobata HOM05D006394 ORTHO05D008057 9.1e-18 93.6 94 53.2
RcHm_v2.0_Chr2g0099531 Rosa chinensis HOM05D006394 ORTHO05D008057 9.1e-18 93.6 84 54.8
Thecc.01G019800 Theobroma cacao HOM05D006394 ORTHO05D008057 9.1e-18 93.6 80 57.5
vmacro21917 Vaccinium macrocarpon HOM05D006394 ORTHO05D008057 9.1e-18 93.6 88 53.4
MD02G1133300 Malus domestica HOM05D006394 ORTHO05D008057 1.2e-17 93.2 88 56.8
Migut.H01156 Erythranthe guttata HOM05D006394 ORTHO05D008057 1.6e-17 92.8 97 54.6
Eucgr.J02427 Eucalyptus grandis HOM05D006394 ORTHO05D008057 2.6e-17 92.0 80 57.5
MSTRG.2708 Avicennia marina HOM05D006394 ORTHO05D008057 3.5e-17 91.7 89 56.2
Sabra05G0094200 Salix brachista HOM05D006394 ORTHO05D008057 4.5e-17 91.3 89 52.8
MELO3C007895.2 Cucumis melo HOM05D006394 ORTHO05D008057 5.9e-17 90.9 93 53.8
Rhsim10G0213000 Rhododendron simsii HOM05D006394 ORTHO05D008057 7.7e-17 90.5 107 47.7
CsaV3_6G047020 Cucumis sativus L. HOM05D006394 ORTHO05D008057 1.0e-16 90.1 84 57.1
Gohir.A11G175800 Gossypium hirsutum HOM05D006394 ORTHO05D008057 1.3e-16 89.7 80 56.2
CANSAT01G2157 Cannabis sativa HOM05D006394 ORTHO05D008057 2.2e-16 89.0 78 57.7
ECA238G0838 Erigeron canadensis HOM05D006394 ORTHO05D008057 2.2e-16 89.0 74 60.8
ClCG01G020230 Citrullus lanatus HOM05D006394 ORTHO05D008057 2.9e-16 88.6 80 58.8
Gohir.D11G183600 Gossypium hirsutum HOM05D006394 ORTHO05D008057 2.9e-16 88.6 80 55.0
Gorai.007G195500 Gossypium raimondii HOM05D006394 ORTHO05D008057 2.9e-16 88.6 80 55.0
COL.COLO4_21919 Corchorus olitorius HOM05D006394 ORTHO05D008057 3.8e-16 88.2 92 48.9
Sed0000291 Sechium edule HOM05D006394 ORTHO05D008057 6.5e-16 87.4 78 57.7
Gohir.D10G090000 Gossypium hirsutum HOM05D006394 ORTHO05D008057 1.1e-15 86.7 80 56.2
Gorai.011G098800 Gossypium raimondii HOM05D006394 ORTHO05D008057 1.1e-15 86.7 80 56.2
HanXRQChr14g0441351 Helianthus annuus HOM05D006394 ORTHO05D008057 1.1e-15 86.7 68 60.3
PSO541G5117 Papaver somniferum HOM05D006394 ORTHO05D008057 1.1e-15 86.7 94 52.1
Medtr8g075970 Medicago truncatula HOM05D006394 ORTHO05D008057 2.5e-15 85.5 72 65.3
PSO675G2528 Papaver somniferum HOM05D006394 ORTHO05D008057 2.5e-15 85.5 70 61.4
TWI53G2075 Tripterygium wilfordii HOM05D006394 ORTHO05D008057 2.5e-15 85.5 80 55.0
Nn6g32361 Nelumbo nucifera HOM05D006394 ORTHO05D008057 3.2e-15 85.1 95 53.7
Glyma.16G129000 Glycine max HOM05D006394 ORTHO05D008057 5.5e-15 84.3 84 53.6
VMungo0251G2040 Vigna mungo HOM05D006394 ORTHO05D008057 5.5e-15 84.3 84 52.4
FvH4_1g11930 Fragaria vesca HOM05D006394 ORTHO05D008057 7.2e-15 84.0 76 53.9
FAN19G0259 Fragaria x ananassa HOM05D006394 ORTHO05D008057 7.2e-15 84.0 76 53.9
FAN23G1778 Fragaria x ananassa HOM05D006394 ORTHO05D008057 7.2e-15 84.0 76 53.9
FAN26G2471 Fragaria x ananassa HOM05D006394 ORTHO05D008057 7.2e-15 84.0 76 53.9
FAN28G2242 Fragaria x ananassa HOM05D006394 ORTHO05D008057 7.2e-15 84.0 76 53.9
Gohir.A10G098200 Gossypium hirsutum HOM05D006394 ORTHO05D008057 1.2e-14 83.2 66 60.6
Manes.01G145300 Manihot esculenta HOM05D006394 ORTHO05D008057 1.2e-14 83.2 78 56.4
Psat4g099000 Pisum sativum HOM05D006394 ORTHO05D008057 1.2e-14 83.2 78 55.1
Zm00001eb418470 Zea mays HOM05D006394 ORTHO05D008057 1.6e-14 82.8 69 59.4
arahy.Tifrunner.gnm1.ann1.SHNU8N Arachis hypogaea HOM05D006394 ORTHO05D008057 2.1e-14 82.4 67 61.2
arahy.Tifrunner.gnm1.ann1.VDMC0V Arachis hypogaea HOM05D006394 ORTHO05D008057 2.1e-14 82.4 67 61.2
Dinv33624 Davidia involucrata HOM05D006394 ORTHO05D008057 2.1e-14 82.4 88 52.3
EL10As8g23834 Beta vulgaris HOM05D006394 ORTHO05D008057 2.7e-14 82.0 79 54.4
Lj4g0024758 Lotus japonicus HOM05D006394 ORTHO05D008057 2.7e-14 82.0 96 47.9
PGR102G2413 Punica granatum HOM05D006394 ORTHO05D008057 2.7e-14 82.0 85 56.5
Aqoxy2G01815 Aquilegia oxysepala HOM05D006394 ORTHO05D008057 3.6e-14 81.6 68 61.8
Hund16487 Selenicereus undatus HOM05D006394 ORTHO05D008057 3.6e-14 81.6 74 60.8
TAR133G0002 Trochodendron aralioides HOM05D006394 ORTHO05D008057 3.6e-14 81.6 98 53.1
Ca_22372_v3 Cicer arietinum L. HOM05D006394 ORTHO05D008057 6.1e-14 80.9 74 58.1
THA.LOC104804261 Tarenaya hassleriana HOM05D006394 ORTHO05D008057 8.0e-14 80.5 89 49.4
BcaB03g16582 Brassica carinata HOM05D006394 ORTHO05D008057 1.0e-13 80.1 89 49.4
Lalb_Chr09g0333101 Lupinus albus HOM05D006394 ORTHO05D008057 1.0e-13 80.1 96 47.9
Glyma.02G048900 Glycine max HOM05D006394 ORTHO05D008057 1.4e-13 79.7 84 52.4
HPP92_007113 Vanilla planifolia HOM05D006394 ORTHO05D008057 2.3e-13 79.0 67 58.2
Carub.0003s3211 Capsella rubella HOM05D006394 ORTHO05D008057 4.0e-13 78.2 112 43.8
Zm00001eb411540 Zea mays HOM05D006394 ORTHO05D008057 4.0e-13 78.2 69 56.5
AT2G17975 Arabidopsis thaliana HOM05D006394 ORTHO05D008057 5.2e-13 77.8 89 49.4
A07p02700 Brassica napus HOM05D006394 ORTHO05D008057 5.2e-13 77.8 77 53.2
BraA07t28070Z Brassica rapa HOM05D006394 ORTHO05D008057 5.2e-13 77.8 77 53.2
TAR365G0979 Trochodendron aralioides HOM05D006394 ORTHO05D008057 6.8e-13 77.4 93 51.6
Aa31LG8G15150 Aethionema arabicum HOM05D006394 ORTHO05D008057 8.8e-13 77.0 89 47.2
BolC7t40901H Brassica oleracea HOM05D006394 ORTHO05D008057 1.2e-12 76.6 89 47.2
Os04g0110600 Oryza sativa ssp. japonica HOM05D006394 ORTHO05D008057 1.2e-12 76.6 70 55.7
Phvul.003G262300 Phaseolus vulgaris HOM05D006394 ORTHO05D008057 1.2e-12 76.6 84 50.0
C07p05000 Brassica napus HOM05D006394 ORTHO05D008057 1.5e-12 76.3 89 47.2
BcaC06g36350 Brassica carinata HOM05D006394 ORTHO05D008057 2.6e-12 75.5 89 47.2
Thhalv10022807m.g Eutrema salsugineum HOM05D006394 ORTHO05D008057 2.6e-12 75.5 89 48.3
Sc16g0002110 Simmondsia chinensis HOM05D006394 ORTHO05D008057 2.6e-12 75.5 65 56.9
CDE04G0153 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 3.4e-12 75.1 69 56.5
AL3G51010 Arabidopsis lyrata HOM05D006394 ORTHO05D008057 4.4e-12 74.7 89 47.2
Zm00001eb089410 Zea mays HOM05D006394 ORTHO05D008057 4.4e-12 74.7 70 58.6
Sp3g31400 Schrenkiella parvula HOM05D006394 ORTHO05D008057 1.7e-11 72.8 89 47.2
CARHR108450 Cardamine hirsuta HOM05D006394 ORTHO05D008057 4.1e-10 68.2 89 42.7
unitig_22.g6143 Utricularia gibba HOM05D006394 ORTHO05D008057 4.1e-10 68.2 123 37.4
Actinidia31001 Actinidia chinensis HOM05D006394 ORTHO05D008057 8.5e-08 60.5 48 58.3
CBR_g22407 Chara braunii HOM05D006394 ORTHO05D008057 1.5e-07 59.7 92 42.4
unitig_8.g2966 Utricularia gibba HOM05D006394 ORTHO05D008057 2.1e-06 55.8 47 57.4


User provided reference genes

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