Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 0.0e+00 1158.3 584 100.0
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 0.0e+00 1144.8 584 99.0
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 6.1e-303 1043.5 587 90.6
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 1.5e-277 959.1 590 84.2
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 3.4e-261 904.8 590 80.3
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 4.9e-260 901.0 594 76.8
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 1.9e-259 899.0 592 76.7
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 4.1e-259 897.9 547 81.0
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 1.2e-258 896.3 566 78.4
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 1.3e-257 892.9 587 76.7
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 1.5e-256 889.4 580 76.4
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 9.5e-256 886.7 579 76.5
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 2.4e-254 882.1 539 78.8
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 5.2e-254 880.9 538 80.3
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 4.4e-253 877.9 625 73.0
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 5.8e-253 877.5 549 79.2
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 5.8e-253 877.5 539 78.5
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 1.3e-252 876.3 538 79.9
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 1.3e-252 876.3 577 75.9
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 3.8e-252 874.8 590 74.6
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 4.9e-252 874.4 549 79.6
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 4.9e-252 874.4 539 80.3
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 6.4e-252 874.0 590 75.1
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 1.9e-251 872.5 586 74.9
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 2.4e-251 872.1 546 78.9
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 3.2e-251 871.7 591 73.8
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 3.2e-251 871.7 594 72.9
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 7.1e-251 870.5 589 75.2
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 1.2e-250 869.8 592 73.8
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 2.1e-250 869.0 544 78.7
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 2.1e-250 869.0 544 78.5
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 2.1e-250 869.0 592 74.0
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 2.7e-250 868.6 538 79.2
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 4.6e-250 867.8 546 78.2
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 4.6e-250 867.8 591 74.1
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 3.0e-249 865.1 592 74.2
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 3.0e-249 865.1 600 72.5
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 3.9e-249 864.8 595 72.9
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 5.6e-248 860.9 544 76.8
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 9.6e-248 860.1 594 71.7
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 4.7e-247 857.8 589 73.2
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 8.1e-247 857.1 522 79.3
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 1.4e-246 856.3 591 73.9
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 1.8e-246 855.9 602 72.1
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 3.1e-246 855.1 526 79.7
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 5.3e-246 854.4 587 73.4
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 1.2e-245 853.2 595 73.3
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 2.0e-245 852.4 592 73.0
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 1.3e-244 849.7 589 73.9
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 2.9e-244 848.6 539 76.8
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 3.8e-244 848.2 538 76.6
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 6.4e-244 847.4 538 77.0
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 2.4e-243 845.5 575 72.3
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 9.3e-243 843.6 538 76.4
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 9.3e-243 843.6 522 80.1
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 9.3e-243 843.6 587 72.6
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 1.2e-242 843.2 539 76.6
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.6e-242 842.8 587 72.9
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 2.1e-242 842.4 604 71.7
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 2.1e-242 842.4 574 74.0
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 3.5e-242 841.6 584 73.5
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 3.5e-242 841.6 589 73.2
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.0e-241 840.1 535 77.0
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 1.3e-241 839.7 596 71.3
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.7e-241 839.3 588 72.4
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 2.3e-241 839.0 594 71.2
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 3.0e-241 838.6 598 71.2
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 3.0e-241 838.6 538 76.0
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 3.3e-240 835.1 539 75.7
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 4.3e-240 834.7 619 69.1
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 2.8e-239 832.0 538 74.5
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 3.6e-239 831.6 593 72.3
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 6.2e-239 830.9 573 74.2
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 6.2e-239 830.9 532 76.3
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 2.4e-238 828.9 595 71.1
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 9.0e-238 827.0 539 75.5
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 9.0e-238 827.0 539 75.5
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 1.2e-237 826.6 545 76.1
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 1.3e-236 823.2 547 73.9
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 3.0e-233 812.0 527 75.7
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.1e-230 803.5 622 67.5
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 9.3e-227 790.4 535 73.5
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 2.3e-225 785.8 523 75.1
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 5.6e-224 781.2 544 73.9
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 2.4e-222 775.8 514 75.9
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 3.4e-221 771.9 538 72.5
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 5.8e-221 771.2 523 73.4
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 1.0e-220 770.4 522 73.8
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 1.4e-219 766.5 539 72.4
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 1.6e-218 763.1 592 66.9
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 2.7e-218 762.3 547 70.7
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 3.9e-217 758.4 490 77.8
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 1.4e-214 750.0 461 78.1
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 3.8e-212 741.9 445 81.6
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 1.9e-211 739.6 563 68.7
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 1.6e-210 736.5 466 75.8
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 4.6e-210 734.9 467 76.0
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 7.9e-210 734.2 521 70.2
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 7.9e-210 734.2 439 85.4
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 8.5e-204 714.1 561 66.8
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 1.5e-200 703.4 444 78.2
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 4.4e-200 701.8 493 71.8
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 8.2e-199 697.6 494 70.4
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 8.5e-196 687.6 509 67.2
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 4.4e-192 675.2 547 64.7
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 7.7e-189 664.5 592 60.3
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 5.0e-188 661.8 505 65.5
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 5.5e-179 631.7 517 62.9
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 4.5e-165 585.5 447 65.5
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 6.8e-161 571.6 387 73.9
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 3.3e-123 446.4 391 57.0
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 6.7e-92 342.4 406 47.8
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 5.5e-86 322.8 200 77.0
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 4.5e-64 250.0 274 48.2
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 3.2e-62 243.8 144 87.5
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-52 212.2 206 52.4
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 1.5e-51 208.4 141 70.9
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 1.9e-41 174.9 100 78.0
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 4.4e-35 153.7 100 73.0
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 1.2e-32 145.6 101 68.3
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 4.9e-26 123.6 106 61.3
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 7.8e-24 116.3 66 78.8
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 1.0e-23 115.9 181 40.9
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 1.1e-22 112.5 74 75.7
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 1.2e-19 102.4 72 69.4
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 1.4e-17 95.5 68 67.6
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 1.4e-17 95.5 68 67.6
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 4.2e-17 94.0 73 61.6
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 6.0e-16 90.1 67 65.7
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 6.0e-16 90.1 67 65.7
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 6.0e-16 90.1 68 64.7
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.6e-13 82.0 54 68.5
SEGI_38231 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 5.6e-06 57.0 38 68.4


User provided reference genes

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