Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 3815.8 1960 100.0
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 3735.7 1961 98.0
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 3529.2 1966 92.2
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 2894.0 1881 80.8
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 2771.9 1774 81.4
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 2699.1 1748 80.9
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2648.2 2033 69.5
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2603.2 1995 68.9
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2578.5 1999 68.2
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2502.2 2001 66.9
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2493.4 1999 67.1
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2466.4 2025 65.6
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2463.3 2021 65.6
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 2463.3 2061 65.5
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2456.4 1984 66.6
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2417.5 2052 63.8
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2392.5 2012 65.0
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2390.1 1997 64.1
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2378.2 2126 62.0
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2358.2 2004 64.4
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2352.0 2006 63.5
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2348.9 2016 63.7
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2343.2 2004 63.3
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2322.4 2003 61.7
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2319.3 2021 63.6
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2310.4 2006 62.6
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2306.9 2005 63.0
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2305.8 1993 62.3
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2302.7 2000 62.5
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2300.4 1993 62.4
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2298.5 1998 62.3
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2298.5 2005 62.3
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2293.1 2014 62.3
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2293.1 2005 62.0
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2290.8 1997 62.3
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2290.4 1997 62.3
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2290.0 2002 61.9
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2276.9 1991 63.0
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2265.3 2038 61.8
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2256.9 2001 62.0
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2251.9 2070 60.9
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2249.6 2004 61.3
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2245.7 2005 61.2
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2243.8 2002 61.7
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2239.9 2013 61.0
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 2233.8 2003 61.3
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2233.0 2020 60.6
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2221.0 1998 61.5
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 2220.7 2006 62.5
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2218.0 2003 60.5
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2215.7 1850 64.8
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2210.6 1993 62.5
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 2206.8 1999 63.6
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2203.7 2044 59.5
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 2202.6 1999 60.7
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2201.0 2113 58.3
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2195.6 2013 59.7
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2191.8 1682 69.1
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 2187.5 2002 58.8
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2183.7 1997 60.5
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2178.7 2061 58.1
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 2177.1 2154 58.2
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2176.0 1992 58.6
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2171.0 2013 59.8
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 2161.3 2005 59.1
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 2129.4 2003 59.7
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 2117.4 2112 56.8
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 2117.4 2023 60.0
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 2094.3 1980 56.2
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2085.5 2001 58.1
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2076.2 2025 57.9
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 2068.9 2005 57.2
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 2068.1 2003 56.9
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 2051.6 2004 56.7
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 2045.8 2003 56.4
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 2045.0 2000 56.4
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 2020.7 2005 57.5
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 2017.7 2002 56.1
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 1999.6 2023 55.5
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1997.6 2031 55.4
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1994.2 1999 55.9
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 1985.7 1921 59.1
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1983.4 1999 55.6
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1978.8 1994 55.3
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1969.9 2014 55.2
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1968.0 2031 54.9
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1966.8 2028 54.6
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1966.8 1998 55.2
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1964.9 1998 54.9
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 1836.6 1970 53.3
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1817.0 2046 51.8
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1815.4 1669 58.7
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1787.7 1493 64.2
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1716.4 1735 57.5
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1652.9 1365 65.3
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1625.5 1437 63.2
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1620.5 2010 48.6
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1365.5 1245 59.6
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1363.6 1189 64.0
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1361.3 1186 63.3
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1358.6 1902 44.1
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1241.9 1530 46.7
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1192.2 1420 48.7
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 5.0e-301 1038.9 777 69.9
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 7.1e-295 1018.5 778 68.5
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 4.4e-289 999.2 778 67.5
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 1.3e-275 954.5 2172 34.4
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 7.4e-268 928.7 835 58.6
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 3.2e-263 913.3 1051 50.2
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 8.7e-261 905.2 975 51.7
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 9.6e-252 875.2 2158 32.6
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 4.2e-247 859.8 1188 43.9
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 2.2e-240 837.4 1272 43.4
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 1.8e-202 711.4 1981 31.3
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 2.0e-196 691.4 654 59.6
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 7.3e-183 646.4 540 63.7
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 2.3e-181 641.3 1948 30.5
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 9.9e-180 636.0 1024 39.6
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 7.8e-177 626.3 423 73.3
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 3.0e-176 624.4 1639 33.0
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.7e-155 555.4 596 51.0
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 3.4e-132 478.0 503 55.5
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 8.8e-128 463.4 320 72.2
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 2.4e-125 455.3 294 79.6
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 4.1e-125 454.5 424 63.2
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 6.3e-118 430.6 318 71.1
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 8.5e-115 420.2 763 39.6
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 1.0e-112 413.3 270 80.0
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 6.3e-102 377.5 546 46.2
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 7.0e-101 374.0 416 48.6
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.0e-99 370.2 356 55.9
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.0e-96 360.1 219 78.5
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 1.2e-89 336.7 248 75.8
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 4.0e-88 331.6 210 75.2
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 6.8e-88 330.9 382 55.5
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 1.9e-82 312.8 257 66.1
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 3.6e-81 308.5 242 66.9
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 1.4e-80 306.6 196 76.0
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 2.9e-70 272.3 166 78.3
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 4.3e-66 258.5 163 76.7
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 3.6e-65 255.4 267 53.9
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 3.6e-65 255.4 159 74.8
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 6.8e-64 251.1 1158 26.6
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 1.5e-55 223.4 213 61.0
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 2.2e-54 219.5 164 63.4
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 6.0e-52 211.5 126 89.7
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 4.2e-45 188.7 125 68.8
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 3.9e-43 182.2 324 37.3
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 1.3e-41 177.2 457 38.7
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 1.1e-40 174.1 124 76.6
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 2.4e-40 172.9 608 28.9
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 3.1e-40 172.6 325 36.9
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 5.8e-39 168.3 90 91.1
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 5.1e-35 155.2 393 36.6
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 1.5e-26 127.1 71 77.5
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 3.4e-23 115.9 112 60.7
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 3.4e-23 115.9 112 60.7
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 1.6e-20 107.1 109 56.0
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 1.3e-19 104.0 181 42.5
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 3.0e-19 102.8 122 57.4
CAN.G1237.23 Capsicum annuum HOM05D000764 ORTHO05D010647 3.9e-19 102.4 106 62.3
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 1.9e-18 100.1 119 47.9
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.1e-16 94.4 67 67.2
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 5.3e-16 92.0 137 45.3
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 3.4e-15 89.4 68 61.8
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 5.0e-14 85.5 109 45.0
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 5.0e-14 85.5 109 45.0
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 1.2e-12 80.9 152 38.8
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 3.1e-08 66.2 89 40.4
C02p26490 Brassica napus HOM05D000951 ORTHO05D032059 7.7e-07 61.6 118 35.6
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 7.7e-07 61.6 55 56.4
PSO339G0018 Papaver somniferum HOM05D000164 ORTHO05D000096 1.0e-06 61.2 82 41.5
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-06 60.8 142 30.3
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 1.7e-06 60.5 51 62.7
SMO358G0275 Selaginella moellendorffii HOM05D015080 ORTHO05D019362 3.8e-06 59.3 61 39.3
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 5.0e-06 58.9 106 36.8


User provided reference genes

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