Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g008710 Solanum pennellii HOM05D005255 ORTHO05D006276 1.8e-66 255.8 124 100.0
Solyc04g017650.4 Solanum lycopersicum HOM05D005255 ORTHO05D006276 8.7e-66 253.4 124 98.4
Sopen04g008740 Solanum pennellii HOM05D005255 ORTHO05D006276 8.7e-66 253.4 124 98.4
PGSC0003DMG400012725 Solanum tuberosum HOM05D005255 ORTHO05D006276 5.8e-62 240.7 124 93.5
Nitab4.5_0001618g0070 Nicotiana tabacum HOM05D005255 ORTHO05D006276 1.9e-60 235.7 124 91.9
Nitab4.5_0011420g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 3.2e-60 235.0 124 89.5
Nitab4.5_0000826g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 4.2e-60 234.6 124 90.3
CAN.G1237.20 Capsicum annuum HOM05D005255 ORTHO05D006276 1.2e-59 233.0 124 90.3
Nitab4.5_0005195g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 2.3e-58 228.8 124 87.9
Peaxi162Scf00130g01019 Petunia axillaris HOM05D005255 ORTHO05D006276 5.1e-58 227.6 124 88.7
Rhsim04G0108300 Rhododendron simsii HOM05D005255 ORTHO05D006276 4.6e-51 204.5 124 77.4
COL.COLO4_21290 Corchorus olitorius HOM05D005255 ORTHO05D006276 7.4e-49 197.2 124 71.8
Duzib093G1389 Durio zibethinus HOM05D005255 ORTHO05D006276 7.4e-49 197.2 124 73.4
vmacro09038 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 1.3e-48 196.4 124 75.0
Haze_19754 Corylus avellana HOM05D005255 ORTHO05D006276 2.2e-48 195.7 124 74.2
Thecc.05G144600 Theobroma cacao HOM05D005255 ORTHO05D006276 4.8e-48 194.5 124 71.8
TAR623G1148 Trochodendron aralioides HOM05D005255 ORTHO05D006276 6.3e-48 194.1 124 73.4
Actinidia38145 Actinidia chinensis HOM05D005255 ORTHO05D006276 1.8e-47 192.6 124 72.6
CSS0035930 Camellia sinensis var. sinensis HOM05D005255 ORTHO05D006276 2.4e-47 192.2 124 71.8
Oeu008184.2 Olea europaea HOM05D005255 ORTHO05D006276 2.4e-47 192.2 124 75.0
MSTRG.6398 Avicennia marina HOM05D005255 ORTHO05D006276 3.1e-47 191.8 124 76.6
CiPaw.09G042700 Carya illinoinensis HOM05D005255 ORTHO05D006276 6.9e-47 190.7 122 73.8
MBI19_g17528_MAGBIO Magnolia biondii HOM05D005255 ORTHO05D006276 6.9e-47 190.7 124 72.6
Lj1C1121T6 Lonicera japonica HOM05D005255 ORTHO05D006276 1.2e-46 189.9 124 73.4
Aqoxy2G00272 Aquilegia oxysepala HOM05D005255 ORTHO05D006276 2.0e-46 189.1 124 72.6
Lj1A1118T28 Lonicera japonica HOM05D005255 ORTHO05D006276 1.3e-45 186.4 124 72.6
QL07p004453 Quercus lobata HOM05D005255 ORTHO05D006276 1.3e-45 186.4 122 73.0
Cfa016749 Carpinus fangiana HOM05D005255 ORTHO05D006276 1.7e-45 186.0 124 71.0
TWI74G1492 Tripterygium wilfordii HOM05D005255 ORTHO05D006276 1.7e-45 186.0 124 68.5
SalBow6G4730 Salvia bowleyana HOM05D005255 ORTHO05D006276 8.5e-45 183.7 123 74.8
Eucgr.A02293 Eucalyptus grandis HOM05D005255 ORTHO05D006276 1.4e-44 183.0 124 66.9
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 3.2e-44 181.8 124 71.0
Manes.09G016500 Manihot esculenta HOM05D005255 ORTHO05D006276 5.5e-44 181.0 124 71.8
Manes.09G016721 Manihot esculenta HOM05D005255 ORTHO05D006276 5.5e-44 181.0 124 71.8
Migut.J01697 Erythranthe guttata HOM05D005255 ORTHO05D006276 9.4e-44 180.3 124 74.2
Cpa.g.sc120.15 Carica papaya HOM05D005255 ORTHO05D006276 1.6e-43 179.5 122 69.7
Potri.006G045100 Populus trichocarpa HOM05D005255 ORTHO05D006276 2.1e-43 179.1 124 69.4
ClCG04G003970 Citrullus lanatus HOM05D005255 ORTHO05D006276 3.6e-43 178.3 124 66.9
PSO339G5261 Papaver somniferum HOM05D005255 ORTHO05D006276 3.6e-43 178.3 124 68.5
CANSAT80G0695 Cannabis sativa HOM05D005255 ORTHO05D006276 4.6e-43 177.9 124 69.4
CANSAT80G1558 Cannabis sativa HOM05D005255 ORTHO05D006276 4.6e-43 177.9 124 69.4
ECA236G0023 Erigeron canadensis HOM05D005255 ORTHO05D006276 6.1e-43 177.6 124 70.2
Prupe.7G049600 Prunus persica HOM05D005255 ORTHO05D006276 1.0e-42 176.8 122 69.7
AUR62030394 Chenopodium quinoa HOM05D005255 ORTHO05D006276 3.0e-42 175.3 123 68.3
SGA_v2.0_scaffold105G30345 Striga asiatica HOM05D005255 ORTHO05D006276 3.0e-42 175.3 123 69.9
Ciclev10006800m.g Citrus clementina HOM05D005255 ORTHO05D006276 5.1e-42 174.5 122 68.0
PGR031G1801 Punica granatum HOM05D005255 ORTHO05D006276 6.7e-42 174.1 124 64.5
Atru.chr1.1248 Acer truncatum HOM05D005255 ORTHO05D006276 8.8e-42 173.7 122 68.9
Lsat_1_v5_gn_8_83080 Lactuca sativa HOM05D005255 ORTHO05D006276 8.8e-42 173.7 122 68.0
Glyma.03G132200 Glycine max HOM05D005255 ORTHO05D006276 1.1e-41 173.3 124 70.2
Cc06_g18410 Coffea canephora HOM05D005255 ORTHO05D006276 2.0e-41 172.6 124 64.5
HanXRQChr06g0176811 Helianthus annuus HOM05D005255 ORTHO05D006276 2.0e-41 172.6 124 66.1
Lj1g0022872 Lotus japonicus HOM05D005255 ORTHO05D006276 7.4e-41 170.6 124 66.9
Sed0023795 Sechium edule HOM05D005255 ORTHO05D006276 1.3e-40 169.9 124 61.3
AT2G41450 Arabidopsis thaliana HOM05D005255 ORTHO05D006276 2.8e-40 168.7 121 66.1
arahy.Tifrunner.gnm1.ann1.5V2BX3 Arachis hypogaea HOM05D005255 ORTHO05D006276 2.8e-40 168.7 124 64.5
arahy.Tifrunner.gnm1.ann1.FQMP84 Arachis hypogaea HOM05D005255 ORTHO05D006276 2.8e-40 168.7 124 64.5
EL10Ac3g07169 Beta vulgaris HOM05D005255 ORTHO05D006276 2.8e-40 168.7 124 64.5
RcHm_v2.0_Chr3g0484561 Rosa chinensis HOM05D005255 ORTHO05D006276 2.8e-40 168.7 122 66.4
unitig_8.g3497 Utricularia gibba HOM05D005255 ORTHO05D006276 2.8e-40 168.7 123 65.9
Hund24659 Selenicereus undatus HOM05D005255 ORTHO05D006276 3.7e-40 168.3 124 65.3
Medtr7g090680 Medicago truncatula HOM05D005255 ORTHO05D006276 4.8e-40 167.9 123 65.9
Psat3g075800 Pisum sativum HOM05D005255 ORTHO05D006276 6.3e-40 167.5 123 68.3
RcHm_v2.0_Chr3g0484121 Rosa chinensis HOM05D005255 ORTHO05D006276 8.2e-40 167.2 122 65.6
Lalb_Chr25g0287041 Lupinus albus HOM05D005255 ORTHO05D006276 1.1e-39 166.8 124 66.1
Nn7g36447 Nelumbo nucifera HOM05D005255 ORTHO05D006276 1.1e-39 166.8 124 65.3
C04p02730 Brassica napus HOM05D005255 ORTHO05D006276 1.4e-39 166.4 121 63.6
BolC4t21913H Brassica oleracea HOM05D005255 ORTHO05D006276 1.4e-39 166.4 121 63.6
DCAR_020535 Daucus carota HOM05D005255 ORTHO05D006276 1.8e-39 166.0 123 62.6
BcaC02g12783 Brassica carinata HOM05D005255 ORTHO05D006276 2.4e-39 165.6 121 62.8
Ca_08423_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 5.3e-39 164.5 124 65.3
Thhalv10016390m.g Eutrema salsugineum HOM05D005255 ORTHO05D006276 6.9e-39 164.1 121 63.6
GSVIVG01033557001 Vitis vinifera HOM05D005255 ORTHO05D006276 6.9e-39 164.1 122 68.0
AUR62026140 Chenopodium quinoa HOM05D005255 ORTHO05D006276 9.1e-39 163.7 132 61.4
Glyma.19G134000 Glycine max HOM05D005255 ORTHO05D006276 9.1e-39 163.7 124 65.3
Ah.13g076740 Amaranthus hybridus HOM05D005255 ORTHO05D006276 1.5e-38 162.9 124 61.3
AL4G39520 Arabidopsis lyrata HOM05D005255 ORTHO05D006276 1.5e-38 162.9 121 62.8
Carub.0004s2374 Capsella rubella HOM05D005255 ORTHO05D006276 1.5e-38 162.9 121 62.8
Phvul.001G128100 Phaseolus vulgaris HOM05D005255 ORTHO05D006276 2.0e-38 162.5 124 65.3
A05p02290 Brassica napus HOM05D005255 ORTHO05D006276 3.4e-38 161.8 121 62.8
BraA05t19224Z Brassica rapa HOM05D005255 ORTHO05D006276 3.4e-38 161.8 121 62.8
VMungo1383G2357 Vigna mungo HOM05D005255 ORTHO05D006276 5.9e-38 161.0 124 65.3
TPR.G32740 Trifolium pratense HOM05D005255 ORTHO05D006276 7.7e-38 160.6 123 65.0
CARHR136560 Cardamine hirsuta HOM05D005255 ORTHO05D006276 1.0e-37 160.2 121 61.2
Sp4g23710 Schrenkiella parvula HOM05D005255 ORTHO05D006276 2.2e-37 159.1 122 62.3
CDE08G0636 Ceratophyllum demersum HOM05D005255 ORTHO05D006276 2.9e-37 158.7 123 60.2
ATR0721G141 Amborella trichopoda HOM05D005255 ORTHO05D006276 3.8e-37 158.3 124 58.1
THA.LOC104817056 Tarenaya hassleriana HOM05D005255 ORTHO05D006276 3.8e-37 158.3 122 68.0
VMungo1383G1524 Vigna mungo HOM05D005255 ORTHO05D006276 6.5e-37 157.5 121 66.1
Aa31LG1G23460 Aethionema arabicum HOM05D005255 ORTHO05D006276 4.2e-36 154.8 121 57.9
Dinv30292 Davidia involucrata HOM05D005255 ORTHO05D006276 2.1e-35 152.5 124 63.7
Zm00001eb286800 Zea mays HOM05D005255 ORTHO05D006276 4.8e-32 141.4 122 53.3
Os05g0376600 Oryza sativa ssp. japonica HOM05D005255 ORTHO05D006276 6.3e-32 141.0 122 52.5
HPP92_003251 Vanilla planifolia HOM05D005255 ORTHO05D006276 1.1e-31 140.2 121 55.4
SEGI_00937 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 2.4e-31 139.0 123 53.7
MELO3C014208.2 Cucumis melo HOM05D005255 ORTHO05D006276 1.2e-30 136.7 104 61.5
CAN.G1237.18 Capsicum annuum HOM05D005255 ORTHO05D006276 2.2e-29 132.5 71 90.1
Lsat_1_v5_gn_5_6521 Lactuca sativa HOM05D005255 ORTHO05D006276 2.7e-27 125.6 92 65.2
Lsat_1_v5_gn_8_83120 Lactuca sativa HOM05D005255 ORTHO05D006276 2.7e-27 125.6 92 65.2
Ca_20730_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 8.0e-27 124.0 91 65.9
CAN.G1237.19 Capsicum annuum HOM05D005255 ORTHO05D006276 2.3e-26 122.5 63 92.1
FAN14G4897 Fragaria x ananassa HOM05D005255 ORTHO05D006276 5.2e-26 121.3 133 48.1
Mapoly0085s0026 Marchantia polymorpha HOM05D005255 ORTHO05D006276 4.1e-23 111.7 126 44.4
AagrBONN_evm.TU.Sc2ySwM_228.5074 Anthoceros agrestis HOM05D005255 ORTHO05D006276 1.6e-19 99.8 124 39.5
TAR624G0532 Trochodendron aralioides HOM05D005255 ORTHO05D006276 2.7e-19 99.0 59 72.9
Ca_08424_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 3.1e-15 85.5 78 55.1
Pp3c4_1630 Physcomitrium patens HOM05D005255 ORTHO05D006276 1.2e-14 83.6 115 34.8
Pp3c4_1631 Physcomitrium patens HOM05D005255 ORTHO05D006276 1.2e-14 83.6 115 34.8
Pp3c8_2040 Physcomitrium patens HOM05D005255 ORTHO05D006276 5.9e-14 81.3 117 30.8
TAR623G1440 Trochodendron aralioides HOM05D005255 ORTHO05D006276 6.5e-13 77.8 53 67.9
TAR624G0617 Trochodendron aralioides HOM05D005255 ORTHO05D006276 8.0e-11 70.9 51 64.7
SMO364G0001 Selaginella moellendorffii HOM05D005255 ORTHO05D006276 1.2e-09 67.0 115 29.6
Eucgr.L01602 Eucalyptus grandis HOM05D002556 ORTHO05D003153 1.2e-06 57.0 116 27.6
SGA_v2.0_scaffold11G05759 Striga asiatica HOM05D002556 ORTHO05D003153 1.6e-06 56.6 116 28.4
HanXRQChr13g0410841 Helianthus annuus HOM05D002556 ORTHO05D003153 2.7e-06 55.8 116 31.0
Thhalv10019982m.g Eutrema salsugineum HOM05D002556 ORTHO05D003153 5.9e-06 54.7 117 26.5
FAN22G1976 Fragaria x ananassa HOM05D002556 ORTHO05D003153 5.9e-06 54.7 118 27.1
Sed0002753 Sechium edule HOM05D002556 ORTHO05D003153 5.9e-06 54.7 118 26.3
SGA_v2.0_scaffold371G50142 Striga asiatica HOM05D002556 ORTHO05D003153 5.9e-06 54.7 116 30.2
Haze_01041 Corylus avellana HOM05D002556 ORTHO05D003153 7.7e-06 54.3 116 28.4


User provided reference genes

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