Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 7.9e-171 603.6 285 100.0
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 7.4e-169 597.0 285 98.6
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 1.4e-167 592.8 285 97.9
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 5.1e-162 574.3 285 93.7
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 9.0e-159 563.5 285 91.9
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 2.5e-156 555.4 285 90.9
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 1.4e-151 539.7 285 86.7
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 1.4e-151 539.7 285 86.7
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 5.3e-151 537.7 282 87.2
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 2.6e-150 535.4 284 87.0
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 5.9e-150 534.3 285 84.9
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 1.7e-149 532.7 284 87.3
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 1.7e-149 532.7 285 86.0
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 6.5e-149 530.8 285 87.0
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 1.1e-148 530.0 285 86.3
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 1.1e-148 530.0 285 86.3
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 4.2e-148 528.1 285 85.3
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 5.5e-148 527.7 285 85.3
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 7.2e-148 527.3 285 85.6
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 1.6e-147 526.2 285 84.6
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 1.6e-147 526.2 285 85.3
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 1.6e-147 526.2 282 86.5
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 1.6e-147 526.2 284 84.9
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 2.7e-147 525.4 285 85.3
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 2.7e-147 525.4 285 85.3
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 3.6e-147 525.0 284 85.6
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 4.7e-147 524.6 285 85.6
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 4.7e-147 524.6 287 85.4
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 4.7e-147 524.6 285 84.9
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 1.0e-146 523.5 284 85.2
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 1.4e-146 523.1 288 85.1
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 2.3e-146 522.3 282 84.4
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 3.0e-146 521.9 285 84.2
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 3.0e-146 521.9 286 84.3
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 3.9e-146 521.5 285 83.9
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 5.1e-146 521.2 285 84.2
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 5.1e-146 521.2 284 83.8
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 6.7e-146 520.8 285 85.3
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 8.8e-146 520.4 284 82.0
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 1.1e-145 520.0 285 83.9
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.1e-145 520.0 285 84.9
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 1.5e-145 519.6 285 83.9
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.5e-145 519.6 282 85.5
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 2.0e-145 519.2 283 83.7
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 3.3e-145 518.5 284 85.2
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 3.3e-145 518.5 284 85.2
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 4.4e-145 518.1 285 83.2
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 9.7e-145 516.9 289 83.7
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 1.3e-144 516.5 284 82.7
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 1.3e-144 516.5 285 83.5
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 1.7e-144 516.2 284 84.2
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 2.8e-144 515.4 282 83.3
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 3.7e-144 515.0 281 83.6
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 3.7e-144 515.0 284 84.9
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 4.8e-144 514.6 282 83.7
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 4.8e-144 514.6 285 84.9
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 4.8e-144 514.6 282 84.8
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 1.8e-143 512.7 290 83.4
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 1.8e-143 512.7 273 85.3
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 5.3e-143 511.1 284 83.5
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 1.2e-142 510.0 285 84.9
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 2.6e-142 508.8 284 82.0
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 4.5e-142 508.1 285 82.8
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 4.5e-142 508.1 284 79.9
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 1.3e-141 506.5 281 81.9
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.7e-141 506.1 286 82.2
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 2.2e-141 505.8 285 80.7
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 2.9e-141 505.4 284 81.7
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 3.8e-141 505.0 283 80.2
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 3.8e-141 505.0 283 82.7
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 5.0e-141 504.6 284 81.7
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 8.5e-141 503.8 285 80.7
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 1.1e-140 503.4 283 81.6
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 1.1e-140 503.4 285 81.1
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 2.5e-140 502.3 286 81.8
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 2.5e-140 502.3 285 81.8
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 4.2e-140 501.5 284 81.0
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 5.5e-140 501.1 285 80.7
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 5.5e-140 501.1 285 80.7
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 7.2e-140 500.7 285 80.7
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 9.4e-140 500.4 280 82.5
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 9.4e-140 500.4 285 80.7
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 9.4e-140 500.4 285 81.1
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 9.4e-140 500.4 284 82.4
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 1.2e-139 500.0 279 83.5
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 1.6e-139 499.6 302 78.1
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 1.6e-139 499.6 279 83.2
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 2.7e-139 498.8 280 82.1
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 2.7e-139 498.8 285 80.7
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 1.0e-138 496.9 286 82.2
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 1.4e-138 496.5 286 82.5
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 1.4e-138 496.5 286 82.5
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 1.4e-138 496.5 286 82.2
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 5.2e-138 494.6 286 80.1
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 8.8e-138 493.8 271 82.3
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 4.4e-137 491.5 298 77.2
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 4.4e-137 491.5 285 80.0
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 9.7e-137 490.3 281 78.6
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 1.7e-136 489.6 279 79.2
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 6.3e-136 487.6 282 81.6
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 6.3e-136 487.6 278 82.7
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 2.4e-135 485.7 284 78.2
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 9.1e-135 483.8 329 69.6
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 7.7e-134 480.7 284 79.6
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 6.7e-130 467.6 279 77.1
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 2.2e-128 462.6 275 76.7
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 2.0e-126 456.1 247 84.2
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 4.5e-126 454.9 287 78.4
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 3.8e-125 451.8 272 74.3
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 5.0e-125 451.4 284 73.9
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 6.5e-125 451.1 275 77.8
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 1.5e-121 439.9 236 86.4
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 1.7e-120 436.4 282 70.2
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 1.6e-118 429.9 234 83.8
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 2.4e-111 406.0 280 67.9
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 4.1e-111 405.2 278 69.4
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 2.7e-110 402.5 277 69.3
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 1.7e-109 399.8 225 83.1
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 3.3e-100 369.0 196 85.2
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 2.0e-97 359.8 219 74.0
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 6.0e-94 348.2 282 58.2
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 1.3e-93 347.1 289 61.2
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 1.4e-87 327.0 273 60.8
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 4.9e-80 302.0 171 83.6
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 8.4e-80 301.2 167 84.4
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 3.3e-76 289.3 309 47.6
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 2.4e-66 256.5 273 47.6
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 1.7e-64 250.4 285 47.0
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 2.7e-62 243.0 278 48.2
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 3.7e-59 232.6 229 50.2
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 4.8e-51 205.7 114 82.5
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 1.9e-44 183.7 103 79.6
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 7.4e-20 102.1 78 61.5
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 4.7e-14 82.8 69 59.4
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 6.1e-14 82.4 78 51.3
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 7.5e-12 75.5 56 60.7
PSO765G0043 Papaver somniferum HOM05D005608 ORTHO05D302623 3.6e-06 56.6 39 71.8


User provided reference genes

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