Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 2.2e-220 768.8 443 100.0
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 1.9e-187 659.4 395 90.1
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.6e-138 495.7 266 99.2
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 4.4e-128 462.2 417 63.3
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 7.3e-123 444.9 338 71.3
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.3e-116 424.1 338 70.7
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 1.6e-114 417.2 381 59.8
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 2.4e-110 403.3 445 55.3
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 2.5e-107 393.3 457 53.8
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 3.3e-107 392.9 474 52.1
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 8.1e-106 388.3 457 54.5
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 8.9e-105 384.8 411 55.5
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 1.3e-103 380.9 438 55.5
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 3.2e-102 376.3 444 52.7
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.2e-101 374.4 443 52.4
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 2.7e-101 373.2 459 52.1
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 3.5e-101 372.9 455 50.5
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 3.5e-101 372.9 476 48.3
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 6.0e-101 372.1 473 48.4
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.9e-99 367.1 442 51.1
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.5e-99 366.7 442 51.1
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 4.3e-99 365.9 500 47.4
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 5.6e-99 365.5 429 51.7
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 7.3e-99 365.2 460 48.0
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 4.8e-98 362.5 439 52.2
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 4.8e-98 362.5 343 59.8
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 1.4e-97 360.9 431 49.7
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.8e-97 360.5 464 49.4
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 4.0e-97 359.4 472 46.4
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 5.3e-97 359.0 438 50.9
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 5.3e-97 359.0 459 49.9
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 6.9e-97 358.6 463 49.9
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 9.0e-97 358.2 444 51.1
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 2.6e-96 356.7 434 50.5
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 4.4e-96 355.9 450 49.3
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 4.4e-96 355.9 436 51.1
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 7.6e-96 355.1 380 53.2
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 9.9e-96 354.8 408 50.7
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 4.9e-95 352.4 450 49.3
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 3.2e-94 349.7 343 59.2
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 4.2e-94 349.4 423 49.9
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.2e-93 347.8 446 48.4
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 1.6e-93 347.4 418 49.8
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 6.0e-93 345.5 461 48.6
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 3.9e-92 342.8 484 49.6
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 8.7e-92 341.7 448 50.0
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.9e-91 340.5 489 45.6
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 3.3e-91 339.7 467 48.6
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 1.6e-90 337.4 451 45.2
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.1e-90 337.0 458 45.2
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 2.8e-90 336.7 412 49.5
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 6.2e-90 335.5 456 46.7
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 1.4e-89 334.3 495 44.6
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 1.8e-89 334.0 457 46.4
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 4.0e-89 332.8 441 45.6
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 9.0e-89 331.6 460 45.9
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.2e-88 331.3 457 46.0
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.6e-88 330.1 459 45.5
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 3.4e-88 329.7 452 46.2
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 7.6e-88 328.6 403 49.6
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 2.2e-87 327.0 477 44.7
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 3.8e-87 326.2 399 48.6
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 1.1e-86 324.7 447 47.2
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 2.4e-86 323.6 454 44.7
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 3.2e-86 323.2 496 44.2
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 4.2e-86 322.8 344 55.5
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 7.1e-86 322.0 411 49.1
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 9.3e-86 321.6 459 44.7
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.7e-85 320.1 449 44.3
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 2.7e-85 320.1 447 45.9
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 6.0e-85 318.9 338 57.7
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.3e-84 317.0 412 47.3
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 3.0e-84 316.6 418 49.3
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 3.0e-84 316.6 510 43.3
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 3.9e-84 316.2 439 46.7
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 3.9e-84 316.2 413 47.9
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 8.7e-84 315.1 382 49.2
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 8.7e-84 315.1 436 45.6
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.1e-83 314.7 414 49.0
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.1e-83 314.7 471 44.4
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 1.9e-83 313.9 442 46.6
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.3e-83 313.2 346 52.9
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 7.4e-83 312.0 475 44.0
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.3e-82 311.2 376 46.3
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 2.1e-82 310.5 429 45.0
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 6.2e-82 308.9 429 44.8
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 6.2e-82 308.9 475 45.3
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 8.1e-82 308.5 445 46.1
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 5.3e-81 305.8 427 44.0
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 1.5e-80 304.3 468 43.2
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 2.0e-80 303.9 434 44.0
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 3.4e-80 303.1 411 46.5
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 3.4e-80 303.1 335 51.3
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 4.5e-80 302.8 347 50.7
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 7.6e-80 302.0 409 44.5
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 7.6e-80 302.0 409 44.5
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 7.6e-80 302.0 409 44.5
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 2.9e-79 300.1 353 51.6
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 4.9e-79 299.3 438 46.3
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 1.1e-78 298.1 406 46.8
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 3.2e-78 296.6 493 40.4
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 4.2e-78 296.2 403 48.1
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 1.6e-77 294.3 413 45.8
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 2.1e-77 293.9 424 45.5
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 2.7e-77 293.5 378 46.8
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 6.0e-77 292.4 462 43.5
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 1.0e-76 291.6 448 44.0
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 1.0e-76 291.6 448 44.0
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 1.0e-76 291.6 448 44.0
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 3.9e-76 289.7 354 50.8
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 6.7e-76 288.9 374 47.9
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 1.6e-74 284.3 408 42.4
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 2.8e-74 283.5 456 42.1
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 8.2e-74 282.0 314 52.5
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 1.4e-73 281.2 428 44.4
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 2.4e-73 280.4 367 46.3
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 3.1e-73 280.0 409 44.7
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 5.8e-72 275.8 308 50.6
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 7.6e-72 275.4 337 49.6
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 2.9e-71 273.5 455 42.4
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 2.9e-71 273.5 455 42.4
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 1.4e-70 271.2 401 45.1
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.4e-70 271.2 386 45.3
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 1.2e-69 268.1 376 44.4
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 1.2e-69 268.1 426 45.8
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 2.1e-69 267.3 311 51.4
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 2.3e-68 263.8 324 48.1
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 3.9e-68 263.1 377 43.2
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 6.7e-68 262.3 386 45.9
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 5.7e-67 259.2 357 47.1
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.7e-63 247.7 299 49.8
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 1.7e-63 247.7 347 44.4
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 9.4e-62 241.9 342 43.9
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.4e-60 238.0 215 62.3
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 8.2e-58 228.8 316 46.8
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 2.2e-55 220.7 254 48.8
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.5e-51 208.0 370 36.2
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.3e-50 204.9 369 36.3
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.1e-49 201.8 506 31.8
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.1e-49 201.8 506 31.8
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 1.5e-48 198.0 392 37.2
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.7e-37 160.6 170 52.4
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.6e-37 160.2 170 52.4
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 6.8e-36 156.0 241 38.6
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 2.8e-34 150.6 283 33.9
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.8e-34 150.6 299 34.1
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 8.3e-34 149.1 387 29.5
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 7.0e-33 146.0 418 29.4
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.5e-30 137.5 306 30.7
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.0e-28 132.1 338 29.3
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 2.3e-28 131.0 178 48.9
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 1.1e-25 122.1 477 26.2
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 4.1e-25 120.2 337 29.1
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 5.4e-25 119.8 310 28.7
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.1e-22 112.1 212 35.4
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.3e-18 98.6 278 27.7
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 1.7e-18 98.2 128 45.3
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 9.2e-17 92.4 161 39.1
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 6.6e-15 86.3 81 53.1
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 6.2e-13 79.7 61 65.6
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 3.1e-12 77.4 93 47.3
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.2e-09 67.4 69 50.7


User provided reference genes

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