Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 5.8e-90 335.1 314 100.0
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.4e-83 313.9 315 89.8
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 5.1e-78 295.4 321 91.3
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 6.0e-47 192.2 332 64.2
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.3e-46 191.0 286 65.0
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 1.6e-39 167.5 324 75.6
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.3e-38 163.7 290 63.4
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 6.7e-38 162.2 281 59.8
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 6.7e-38 162.2 290 63.4
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 8.7e-38 161.8 290 63.4
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 1.1e-37 161.4 285 60.0
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 1.9e-37 160.6 280 59.6
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 9.6e-37 158.3 281 58.0
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 1.3e-36 157.9 281 58.0
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 4.8e-36 156.0 280 57.9
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 6.3e-36 155.6 279 59.1
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 1.4e-35 154.5 287 58.2
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 3.1e-35 153.3 282 63.5
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.1e-35 153.3 282 63.5
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 5.3e-35 152.5 320 54.7
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 5.3e-35 152.5 291 57.7
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 3.4e-34 149.8 305 57.0
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 7.6e-34 148.7 284 57.7
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 1.0e-33 148.3 282 59.6
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 1.0e-33 148.3 285 57.5
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 2.9e-33 146.7 291 49.8
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 6.5e-33 145.6 278 49.6
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 3.2e-32 143.3 283 59.0
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 4.2e-32 142.9 285 58.9
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 1.2e-31 141.4 280 57.9
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 2.1e-31 140.6 197 46.7
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 3.6e-31 139.8 280 52.9
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 4.6e-31 139.4 277 61.0
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 7.9e-31 138.7 285 59.3
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 2.3e-30 137.1 322 53.1
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 2.3e-30 137.1 276 60.9
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 3.0e-30 136.7 286 57.0
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 3.0e-30 136.7 277 54.5
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 3.9e-30 136.3 286 57.7
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 6.7e-30 135.6 277 57.4
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.1e-29 134.8 284 56.7
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 1.5e-29 134.4 282 55.7
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 2.5e-29 133.7 263 60.5
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 1.3e-28 131.3 288 55.9
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 4.8e-28 129.4 293 55.3
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 6.3e-28 129.0 201 44.3
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 6.3e-28 129.0 203 44.3
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 6.3e-28 129.0 290 54.8
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.1e-27 128.3 285 55.1
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.8e-27 127.5 275 57.5
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 1.8e-27 127.5 284 58.1
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.4e-27 127.1 275 57.5
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 3.1e-27 126.7 282 55.7
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 9.0e-27 125.2 279 59.1
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.5e-26 124.4 275 57.1
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 1.5e-26 124.4 275 57.1
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 2.6e-26 123.6 319 50.2
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 3.4e-26 123.2 284 54.2
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 4.5e-26 122.9 281 54.4
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 7.7e-26 122.1 284 53.9
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 7.7e-26 122.1 288 53.8
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 1.3e-25 121.3 285 54.0
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 1.3e-25 121.3 208 45.2
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 2.2e-25 120.6 301 54.5
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.2e-25 120.6 279 55.2
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 2.9e-25 120.2 284 53.9
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 5.0e-25 119.4 291 51.9
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 8.5e-25 118.6 281 55.9
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 8.5e-25 118.6 255 59.6
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.4e-24 117.9 284 34.2
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 1.4e-24 117.9 278 51.8
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 1.4e-24 117.9 280 52.9
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 1.9e-24 117.5 295 54.2
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 1.9e-24 117.5 303 60.1
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 1.9e-24 117.5 280 53.6
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.9e-24 117.5 279 56.6
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 3.2e-24 116.7 289 52.2
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 4.2e-24 116.3 275 56.4
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 5.5e-24 115.9 278 56.8
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 5.5e-24 115.9 314 51.3
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 9.4e-24 115.2 286 54.5
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.2e-23 114.8 200 42.5
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 1.6e-23 114.4 282 43.6
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 6.1e-23 112.5 311 34.1
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 6.1e-23 112.5 281 53.4
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 1.4e-22 111.3 279 57.7
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 3.0e-22 110.2 286 51.0
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 5.1e-22 109.4 208 43.3
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 8.8e-22 108.6 293 51.2
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 2.0e-21 107.5 281 52.0
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 3.3e-21 106.7 288 51.7
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 4.3e-21 106.3 206 40.3
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 5.7e-21 105.9 279 51.3
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 1.3e-20 104.8 286 55.2
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 2.2e-20 104.0 275 50.5
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 8.2e-20 102.1 278 57.6
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.8e-19 100.9 277 53.4
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 1.8e-19 100.9 225 41.8
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 3.1e-19 100.1 296 49.3
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 3.1e-19 100.1 287 54.4
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 1.2e-18 98.2 193 38.9
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 4.5e-18 96.3 283 54.8
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 1.7e-17 94.4 231 37.2
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 2.9e-17 93.6 279 39.4
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 2.9e-17 93.6 279 39.4
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 3.8e-17 93.2 282 40.1
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 3.8e-17 93.2 197 41.1
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 3.8e-17 93.2 291 54.6
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 5.0e-17 92.8 280 47.9
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 5.0e-17 92.8 286 49.7
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 6.5e-17 92.4 288 50.0
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 1.1e-16 91.7 279 46.6
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 1.1e-16 91.7 279 46.6
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.4e-16 91.3 278 50.0
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 1.9e-16 90.9 274 55.5
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 2.5e-16 90.5 274 50.0
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 3.2e-16 90.1 279 50.5
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 9.4e-16 88.6 282 50.4
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 9.4e-16 88.6 278 48.6
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.2e-15 88.2 274 50.4
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 1.2e-15 88.2 139 48.9
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 1.2e-15 88.2 300 49.3
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 1.6e-15 87.8 281 52.7
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 2.7e-15 87.0 274 51.1
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 2.7e-15 87.0 274 53.6
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 2.7e-15 87.0 274 51.1
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 2.7e-15 87.0 274 51.1
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 3.6e-15 86.7 337 32.6
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 4.7e-15 86.3 279 49.8
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 6.1e-15 85.9 278 54.3
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 7.9e-15 85.5 131 80.9
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 7.9e-15 85.5 118 56.8
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.0e-14 85.1 202 37.6
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 1.0e-14 85.1 281 50.9
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.4e-14 84.7 305 48.5
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 3.0e-14 83.6 281 46.6
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 3.9e-14 83.2 118 54.2
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 3.9e-14 83.2 274 50.0
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 6.7e-14 82.4 274 49.6
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 1.5e-13 81.3 287 47.0
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.5e-13 81.3 236 54.2
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 2.0e-13 80.9 197 39.1
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 2.0e-13 80.9 283 60.4
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 2.6e-13 80.5 280 52.9
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 3.3e-13 80.1 280 56.1
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 4.4e-13 79.7 298 50.7
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 9.7e-13 78.6 140 74.3
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 2.2e-12 77.4 291 52.9
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 3.7e-12 76.6 290 46.6
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 6.3e-12 75.9 275 49.5
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 1.1e-11 75.1 274 47.8
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 2.4e-11 73.9 227 38.8
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 2.0e-10 70.9 296 49.7
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 2.6e-10 70.5 195 31.3
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 1.0e-09 68.6 275 37.1
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.3e-09 68.2 191 33.5
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.9e-09 67.0 139 41.7
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 3.2e-08 63.5 253 55.3
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 3.2e-08 63.5 139 71.9
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 7.2e-08 62.4 69 55.1
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 9.4e-08 62.0 38 78.9
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 2.1e-07 60.8 72 51.4
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 2.7e-07 60.5 38 81.6
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 2.7e-07 60.5 280 33.2
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 4.7e-07 59.7 278 42.4
HPP92_019616 Vanilla planifolia HOM05D004060 ORTHO05D004967 8.0e-07 58.9 68 51.5


User provided reference genes

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