Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g007550 Solanum pennellii HOM05D006516 ORTHO05D008083 6.5e-166 587.4 317 100.0
Solyc04g015480.3 Solanum lycopersicum HOM05D006516 ORTHO05D008083 9.4e-165 583.6 317 96.8
PGSC0003DMG400027234 Solanum tuberosum HOM05D006516 ORTHO05D008083 2.0e-138 496.1 354 78.8
Nitab4.5_0001663g0100 Nicotiana tabacum HOM05D006516 ORTHO05D008083 1.2e-122 443.7 348 73.6
Dinv30343 Davidia involucrata HOM05D006516 ORTHO05D008083 1.2e-111 407.1 244 82.8
TAR628G0816 Trochodendron aralioides HOM05D006516 ORTHO05D008083 8.6e-110 401.0 286 71.7
Atru.chr4.1049 Acer truncatum HOM05D006516 ORTHO05D008083 6.8e-107 391.3 269 74.7
Eucgr.I00111 Eucalyptus grandis HOM05D006516 ORTHO05D008083 1.5e-106 390.2 281 69.8
MSTRG.23495 Avicennia marina HOM05D006516 ORTHO05D008083 4.4e-106 388.7 242 79.8
FAN26G1784 Fragaria x ananassa HOM05D006516 ORTHO05D008083 7.6e-106 387.9 220 83.6
Oeu011021.1 Olea europaea HOM05D006516 ORTHO05D008083 9.9e-106 387.5 270 74.4
RcHm_v2.0_Chr2g0122781 Rosa chinensis HOM05D006516 ORTHO05D008083 1.7e-105 386.7 283 71.7
Prupe.4G278200 Prunus persica HOM05D006516 ORTHO05D008083 2.9e-105 386.0 285 70.5
Sc06g0006730 Simmondsia chinensis HOM05D006516 ORTHO05D008083 4.9e-105 385.2 241 77.2
TWI31G0808 Tripterygium wilfordii HOM05D006516 ORTHO05D008083 4.9e-105 385.2 220 83.2
CSS0037144 Camellia sinensis var. sinensis HOM05D006516 ORTHO05D008083 2.4e-104 382.9 333 65.5
FAN28G2638 Fragaria x ananassa HOM05D006516 ORTHO05D008083 1.6e-103 380.2 220 82.7
PGR119G1413 Punica granatum HOM05D006516 ORTHO05D008083 4.6e-103 378.6 332 64.2
CAN.G676.43 Capsicum annuum HOM05D006516 ORTHO05D008083 1.7e-102 376.7 241 82.6
Sabra07G0082800 Salix brachista HOM05D006516 ORTHO05D008083 1.7e-102 376.7 301 64.1
CANSAT01G0949 Cannabis sativa HOM05D006516 ORTHO05D008083 2.3e-102 376.3 294 67.0
MD00G1064700 Malus domestica HOM05D006516 ORTHO05D008083 3.0e-102 375.9 279 71.7
EL10Ac4g09645 Beta vulgaris HOM05D006516 ORTHO05D008083 5.1e-102 375.2 238 73.9
CDE08G1595 Ceratophyllum demersum HOM05D006516 ORTHO05D008083 1.1e-101 374.0 260 70.0
Manes.12G147400 Manihot esculenta HOM05D006516 ORTHO05D008083 1.5e-101 373.6 214 84.6
MELO3C023197.2 Cucumis melo HOM05D006516 ORTHO05D008083 1.9e-101 373.2 245 75.5
Ciclev10001875m.g Citrus clementina HOM05D006516 ORTHO05D008083 2.5e-101 372.9 256 72.7
THA.LOC104804401 Tarenaya hassleriana HOM05D006516 ORTHO05D008083 2.5e-101 372.9 241 75.9
HanXRQChr15g0469261 Helianthus annuus HOM05D006516 ORTHO05D008083 3.3e-101 372.5 231 78.4
PSO170G3530 Papaver somniferum HOM05D006516 ORTHO05D008083 5.6e-101 371.7 235 77.9
Gohir.A05G381800 Gossypium hirsutum HOM05D006516 ORTHO05D008083 7.3e-101 371.3 290 69.3
Migut.H00817 Erythranthe guttata HOM05D006516 ORTHO05D008083 9.6e-101 370.9 218 83.0
Gohir.D04G033500 Gossypium hirsutum HOM05D006516 ORTHO05D008083 1.6e-100 370.2 290 69.0
Potri.007G099900 Populus trichocarpa HOM05D006516 ORTHO05D008083 2.1e-100 369.8 357 58.3
Aqoxy6G00267 Aquilegia oxysepala HOM05D006516 ORTHO05D008083 3.6e-100 369.0 267 69.7
CsaV3_2G019760 Cucumis sativus L. HOM05D006516 ORTHO05D008083 3.6e-100 369.0 309 65.0
Lsat_1_v5_gn_5_69121 Lactuca sativa HOM05D006516 ORTHO05D008083 3.6e-100 369.0 220 80.9
Thecc.01G139400 Theobroma cacao HOM05D006516 ORTHO05D008083 3.6e-100 369.0 336 63.7
FAN19G1952 Fragaria x ananassa HOM05D006516 ORTHO05D008083 1.8e-99 366.7 221 81.4
Cc02_g33920 Coffea canephora HOM05D006516 ORTHO05D008083 6.9e-99 364.8 204 87.3
Cpa.g.sc37.17 Carica papaya HOM05D006516 ORTHO05D008083 3.4e-98 362.5 287 69.3
Sed0013830 Sechium edule HOM05D006516 ORTHO05D008083 7.6e-98 361.3 219 79.0
AL7G18070 Arabidopsis lyrata HOM05D006516 ORTHO05D008083 9.9e-98 360.9 336 59.5
AT4G33480 Arabidopsis thaliana HOM05D006516 ORTHO05D008083 9.9e-98 360.9 332 60.2
AUR62000533 Chenopodium quinoa HOM05D006516 ORTHO05D008083 1.3e-97 360.5 234 73.5
ECA233G3512 Erigeron canadensis HOM05D000595 ORTHO05D006275 1.3e-97 360.5 298 65.4
CARHR241560 Cardamine hirsuta HOM05D006516 ORTHO05D008083 1.7e-97 360.1 339 60.2
unitig_899.g15157 Utricularia gibba HOM05D006516 ORTHO05D008083 2.9e-97 359.4 220 79.1
CiPaw.03G117200 Carya illinoinensis HOM05D006516 ORTHO05D008083 4.9e-97 358.6 288 67.4
DCAR_019988 Daucus carota HOM05D006516 ORTHO05D008083 1.9e-96 356.7 325 62.5
Carub.0007s0699 Capsella rubella HOM05D006516 ORTHO05D008083 2.4e-96 356.3 333 59.2
A01p04790 Brassica napus HOM05D006516 ORTHO05D008083 2.1e-95 353.2 235 73.2
BraA01t00462Z Brassica rapa HOM05D006516 ORTHO05D008083 3.5e-95 352.4 214 78.5
FAN23G2617 Fragaria x ananassa HOM05D006516 ORTHO05D008083 1.0e-94 350.9 218 79.4
GSVIVG01022337001 Vitis vinifera HOM05D006516 ORTHO05D008083 1.7e-94 350.1 198 86.9
SGA_v2.0_scaffold54G19604 Striga asiatica HOM05D006516 ORTHO05D008083 3.0e-94 349.4 228 74.6
QL10p040847 Quercus lobata HOM05D006516 ORTHO05D008083 6.6e-94 348.2 215 80.0
BcaC09g52164 Brassica carinata HOM05D006516 ORTHO05D008083 1.1e-93 347.4 321 61.7
C01p05200 Brassica napus HOM05D006516 ORTHO05D008083 6.2e-92 341.7 323 60.1
Actinidia06588 Actinidia chinensis HOM05D006516 ORTHO05D008083 1.1e-91 340.9 238 71.8
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 1.8e-91 340.1 290 61.0
Glyma.05G194700 Glycine max HOM05D006516 ORTHO05D008083 5.3e-91 338.6 285 62.5
Actinidia20043 Actinidia chinensis HOM05D006516 ORTHO05D008083 1.5e-90 337.0 283 62.9
Haze_25362 Corylus avellana HOM05D006516 ORTHO05D008083 1.5e-90 337.0 284 65.5
Cfa002190 Carpinus fangiana HOM05D006516 ORTHO05D008083 4.5e-90 335.5 365 55.1
PSO528G0185 Papaver somniferum HOM05D006516 ORTHO05D008083 2.2e-89 333.2 196 82.1
arahy.Tifrunner.gnm1.ann1.YP7URC Arachis hypogaea HOM05D006516 ORTHO05D008083 2.9e-89 332.8 307 56.0
PSO063G7430 Papaver somniferum HOM05D006516 ORTHO05D008083 2.4e-88 329.7 196 81.6
Lalb_Chr13g0296721 Lupinus albus HOM05D006516 ORTHO05D008083 1.2e-87 327.4 209 74.2
Lj4g0011477 Lotus japonicus HOM05D006516 ORTHO05D008083 2.1e-87 326.6 222 70.7
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 6.0e-87 325.1 197 79.2
arahy.Tifrunner.gnm1.ann1.8KJ0MH Arachis hypogaea HOM05D006516 ORTHO05D008083 1.1e-85 320.9 294 56.1
BolC1t00500H Brassica oleracea HOM05D006516 ORTHO05D008021 1.9e-85 320.1 310 58.4
Peaxi162Scf01713g00018 Petunia axillaris HOM05D006516 ORTHO05D008083 3.3e-85 319.3 222 77.5
Duzib147G1587 Durio zibethinus HOM05D006516 ORTHO05D008083 7.4e-85 318.2 296 59.5
Medtr8g094200 Medicago truncatula HOM05D006516 ORTHO05D008083 2.1e-84 316.6 235 64.3
Hund07224 Selenicereus undatus HOM05D006516 ORTHO05D008083 4.8e-84 315.5 288 56.9
Lalb_Chr08g0238111 Lupinus albus HOM05D006516 ORTHO05D008083 1.8e-83 313.5 222 69.4
Nitab4.5_0000733g0220 Nicotiana tabacum HOM05D006516 ORTHO05D008083 3.1e-83 312.8 280 67.1
FvH4_1g25120 Fragaria vesca HOM05D006516 ORTHO05D008083 1.2e-82 310.8 174 82.8
Gorai.012G037800 Gossypium raimondii HOM05D006516 ORTHO05D008083 7.6e-82 308.1 253 64.8
arahy.Tifrunner.gnm1.ann1.I5MJF2 Arachis hypogaea HOM05D006516 ORTHO05D008083 2.9e-81 306.2 214 68.7
Glyma.06G156800 Glycine max HOM05D006516 ORTHO05D008083 9.3e-80 301.2 271 59.4
Zm00001eb434490 Zea mays HOM05D006516 ORTHO05D008083 1.2e-79 300.8 213 65.7
Ca_17618_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 1.0e-78 297.7 204 67.6
AUR62006880 Chenopodium quinoa HOM05D006516 ORTHO05D008083 1.3e-78 297.4 328 50.9
COL.COLO4_12072 Corchorus olitorius HOM05D006516 ORTHO05D008083 3.0e-78 296.2 295 59.0
arahy.Tifrunner.gnm1.ann1.5F6SWA Arachis hypogaea HOM05D006516 ORTHO05D008083 5.1e-78 295.4 228 64.9
Lj1g0010918 Lotus japonicus HOM05D006516 ORTHO05D008083 8.7e-78 294.7 213 67.6
Thhalv10025682m.g Eutrema salsugineum HOM05D006516 ORTHO05D008083 1.5e-77 293.9 292 57.2
Psat5g086920 Pisum sativum HOM05D006516 ORTHO05D008083 1.9e-77 293.5 219 67.1
VMungo1309G1214 Vigna mungo HOM05D006516 ORTHO05D008083 3.7e-76 289.3 216 67.1
TPR.G37339 Trifolium pratense HOM05D006516 ORTHO05D008083 1.4e-72 277.3 284 53.2
Psat7g044240 Pisum sativum HOM05D006516 ORTHO05D008083 4.6e-71 272.3 284 52.8
Ca_16991_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 1.3e-65 254.2 263 55.5
Ca_17019_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 1.3e-65 254.2 263 55.5
CiPaw.04G078600 Carya illinoinensis HOM05D006516 ORTHO05D008083 3.8e-65 252.7 286 54.9
ATR0138G020 Amborella trichopoda HOM05D006516 ORTHO05D008083 1.1e-64 251.1 198 62.1
Medtr3g096860 Medicago truncatula HOM05D006516 ORTHO05D008083 7.9e-63 245.0 289 49.8
Mapoly0149s0016 Marchantia polymorpha HOM05D006516 ORTHO05D008083 2.5e-61 240.0 214 55.6
Phvul.009G153500 Phaseolus vulgaris HOM05D006516 ORTHO05D008083 3.3e-61 239.6 179 65.9
TPR.G33574 Trifolium pratense HOM05D006516 ORTHO05D008083 2.4e-59 233.4 168 66.7
Pp3c3_32640 Physcomitrium patens HOM05D006516 ORTHO05D008083 1.1e-56 224.6 215 53.0
Nn1g08886 Nelumbo nucifera HOM05D006516 ORTHO05D008083 1.2e-55 221.1 235 55.3
Aa31sc146G60 Aethionema arabicum HOM05D006516 ORTHO05D008083 3.6e-55 219.5 194 59.3
AagrBONN_evm.TU.Sc2ySwM_369.382 Anthoceros agrestis HOM05D006516 ORTHO05D008083 1.8e-54 217.2 217 52.1
Sp7g31210 Schrenkiella parvula HOM05D006516 ORTHO05D008083 3.7e-52 209.5 127 75.6
Rhsim10G0127700 Rhododendron simsii HOM05D006516 ORTHO05D008083 3.6e-47 193.0 190 53.7
MBI06_g45441_MAGBIO Magnolia biondii HOM05D006516 ORTHO05D008083 7.9e-47 191.8 276 47.5
ClCG02G000090 Citrullus lanatus HOM05D006516 ORTHO05D008083 8.8e-46 188.3 125 72.0
Nn1g08902 Nelumbo nucifera HOM05D006516 ORTHO05D008083 2.3e-38 163.7 90 88.9
Aa31sc146G50 Aethionema arabicum HOM05D006516 ORTHO05D008083 4.4e-37 159.5 90 85.6
Hma1.2p1_1551F.1_g290160 Hydrangea macrophylla HOM05D006516 ORTHO05D008083 6.3e-36 155.6 86 82.6
Peaxi162Scf01713g00017 Petunia axillaris HOM05D006516 ORTHO05D008083 1.3e-28 131.3 69 97.1
CBR_g51961 Chara braunii HOM05D006516 ORTHO05D008083 3.7e-28 129.8 233 34.8
Sp7g31200 Schrenkiella parvula HOM05D006516 ORTHO05D008083 6.8e-22 109.0 62 88.7
Nn1g08901 Nelumbo nucifera HOM05D003028 ORTHO05D003465 9.8e-21 105.1 154 40.9
PRCOL_00004760 Prasinoderma coloniale HOM05D006516 ORTHO05D008083 3.1e-19 100.1 167 34.1
MCO05G028 Micromonas commoda HOM05D006516 ORTHO05D008083 1.5e-16 91.3 177 33.9
COL.COLO4_30311 Corchorus olitorius HOM05D000221 ORTHO05D008083 3.0e-14 83.6 48 81.2
FAN28G1699 Fragaria x ananassa HOM05D006516 ORTHO05D008083 1.7e-12 77.8 46 89.1
MBI06_g33106_MAGBIO Magnolia biondii HOM05D006516 ORTHO05D008083 2.7e-10 70.5 67 55.2
ATR0138G010 Amborella trichopoda HOM05D006516 ORTHO05D008083 1.2e-07 61.6 37 89.2


User provided reference genes

Program Settings