Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 1.0e-232 809.7 408 100.0
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 4.4e-231 804.3 408 99.0
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 2.8e-198 695.3 411 86.9
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 9.2e-197 690.3 409 87.0
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 4.5e-196 688.0 408 87.3
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.7e-195 686.0 411 85.9
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.7e-195 686.0 409 86.6
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.7e-195 686.0 408 87.0
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 5.1e-171 604.7 409 77.3
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 8.6e-171 604.0 409 76.8
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 7.1e-157 557.8 358 78.8
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 3.0e-131 472.6 423 58.9
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 1.5e-130 470.3 424 58.5
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 2.5e-130 469.5 419 58.7
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 4.2e-125 452.2 423 57.4
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 1.2e-124 450.7 424 57.5
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 7.4e-122 441.4 424 54.7
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 6.3e-121 438.3 419 54.9
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 1.0e-118 431.0 424 52.8
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 5.0e-118 428.7 373 59.8
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 8.5e-118 427.9 413 54.2
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 1.2e-116 424.1 423 53.2
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 2.8e-113 412.9 389 56.3
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 7.0e-112 408.3 423 51.8
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 2.6e-111 406.4 411 52.6
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 2.9e-110 402.9 422 50.7
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 6.5e-110 401.7 428 51.2
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 1.1e-109 401.0 425 51.8
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 4.2e-109 399.1 410 51.2
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 3.9e-107 392.5 424 51.4
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 3.3e-106 389.4 412 50.0
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 3.3e-106 389.4 422 48.8
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 2.2e-105 386.7 429 49.9
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 4.1e-104 382.5 420 49.3
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 8.5e-102 374.8 438 47.5
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 7.2e-101 371.7 353 55.5
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 4.7e-100 369.0 423 47.5
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 1.0e-99 367.9 428 47.7
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 1.0e-99 367.9 431 47.6
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 6.8e-99 365.2 394 50.5
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 1.3e-97 360.9 419 47.0
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 2.2e-97 360.1 411 47.9
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 8.3e-97 358.2 411 47.2
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 3.1e-96 356.3 424 45.3
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 2.0e-95 353.6 417 48.0
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 3.5e-95 352.8 439 47.4
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 3.5e-95 352.8 438 47.9
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 7.7e-95 351.7 389 48.8
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 1.0e-94 351.3 422 44.8
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 1.7e-94 350.5 423 47.5
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 2.2e-94 350.1 462 43.3
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 1.1e-93 347.8 427 46.4
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 1.9e-93 347.1 425 45.9
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 1.9e-93 347.1 403 46.9
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 3.2e-93 346.3 422 45.7
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 7.2e-93 345.1 416 47.6
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 9.4e-93 344.7 416 45.4
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.2e-92 344.4 419 44.6
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.6e-92 344.0 422 45.3
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.1e-92 343.6 399 49.1
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 2.7e-92 343.2 418 47.1
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 3.6e-92 342.8 422 45.0
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 8.0e-92 341.7 419 46.1
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 4.0e-91 339.3 376 46.8
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.0e-90 337.0 419 44.9
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 2.0e-90 337.0 417 46.8
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 2.6e-90 336.7 422 45.5
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 3.4e-90 336.3 422 46.0
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 4.4e-90 335.9 421 46.3
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 5.7e-90 335.5 419 46.5
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 1.1e-88 331.3 405 47.9
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 1.4e-88 330.9 423 45.6
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 1.4e-88 330.9 423 44.4
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 1.4e-88 330.9 423 44.2
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 1.4e-88 330.9 411 45.3
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 2.4e-88 330.1 428 46.3
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 5.4e-88 328.9 428 45.6
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 1.2e-87 327.8 425 46.6
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 2.0e-87 327.0 419 46.1
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 3.5e-87 326.2 428 45.3
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 5.9e-87 325.5 420 46.4
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.3e-86 324.3 419 43.9
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 2.3e-86 323.6 421 43.7
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 8.6e-86 321.6 414 44.2
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 8.6e-86 321.6 428 42.5
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 2.5e-85 320.1 409 45.2
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 3.3e-85 319.7 417 43.9
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 3.3e-85 319.7 417 43.9
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 4.2e-85 319.3 466 42.7
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 9.5e-85 318.2 462 42.6
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 1.2e-84 317.8 422 44.3
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 2.1e-84 317.0 409 47.2
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 3.6e-84 316.2 415 43.4
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 3.0e-83 313.2 384 44.5
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 6.8e-83 312.0 411 43.1
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.6e-82 310.1 416 41.6
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.4e-82 309.7 414 45.7
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 3.2e-80 303.1 419 43.4
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 5.4e-80 302.4 398 45.0
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 5.4e-80 302.4 420 44.3
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.0e-79 300.4 416 42.3
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 4.5e-79 299.3 365 47.7
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 1.9e-77 293.9 420 43.6
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 3.4e-74 283.1 405 41.2
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 1.6e-71 274.2 416 39.9
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 2.0e-71 273.9 331 44.4
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 6.6e-70 268.9 356 46.1
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 8.6e-62 241.9 329 47.7
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 2.8e-60 236.9 421 36.8
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 1.1e-59 235.0 145 81.4
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.4e-59 234.6 209 57.9
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.4e-59 234.6 381 38.1
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 1.8e-59 234.2 421 36.1
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 4.4e-58 229.6 376 35.1
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 2.1e-55 220.7 350 36.0
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 3.3e-53 213.4 266 48.5
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 4.2e-48 196.4 380 35.3
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.7e-46 191.0 207 46.4
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 9.9e-42 175.3 328 34.8
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 6.4e-41 172.6 426 28.2
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 7.9e-39 165.6 153 55.6
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 8.7e-38 162.2 431 28.3
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 4.3e-37 159.8 180 41.1
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 8.1e-36 155.6 436 29.6
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 5.8e-34 149.4 436 25.5
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 4.9e-33 146.4 433 28.6
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 3.5e-31 140.2 461 27.1
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 7.9e-31 139.0 393 29.3
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.6e-28 131.3 488 24.6
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 9.0e-27 125.6 356 28.4
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.4e-19 101.7 194 32.5
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.0e-18 97.8 348 26.1
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-14 85.5 214 31.3
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 6.7e-14 82.8 88 45.5
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 9.7e-13 79.0 77 50.6
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 1.1e-11 75.5 54 55.6
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 1.3e-09 68.6 91 47.3
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.5e-08 64.3 238 28.2
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.7e-07 60.8 59 54.2
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 3.9e-06 57.0 63 46.0


User provided reference genes

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