Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 1.9e-231 805.4 406 100.0
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 9.3e-226 786.6 406 98.0
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 3.1e-197 691.8 408 87.3
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 9.1e-197 690.3 408 87.3
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 8.0e-193 677.2 410 86.1
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 6.8e-192 674.1 410 85.6
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 7.0e-189 664.1 409 85.1
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.6e-185 652.9 409 83.9
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 5.7e-183 644.4 409 81.4
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 7.0e-181 637.5 409 80.2
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 5.4e-165 584.7 356 81.5
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 9.0e-136 487.6 419 61.3
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 2.6e-135 486.1 418 61.0
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 2.9e-134 482.6 414 60.1
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 3.0e-131 472.6 418 59.8
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 4.3e-130 468.8 419 59.4
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 6.2e-129 464.9 414 57.5
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 3.5e-124 449.1 419 56.1
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 3.5e-124 449.1 423 54.1
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 1.1e-122 444.1 372 61.3
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 1.3e-121 440.7 407 56.3
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 2.8e-121 439.5 418 55.0
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 6.9e-120 434.9 410 55.9
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 1.1e-117 427.6 418 54.1
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 2.7e-116 422.9 418 53.6
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 6.0e-116 421.8 388 57.5
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 3.9e-115 419.1 421 54.2
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 3.9e-115 419.1 408 53.4
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 3.3e-114 416.0 418 52.4
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 3.7e-113 412.5 410 52.0
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 2.4e-112 409.8 422 53.3
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 2.6e-111 406.4 421 51.5
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 2.6e-111 406.4 422 52.6
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 1.6e-108 397.1 423 50.1
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 1.0e-107 394.4 437 49.2
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 3.0e-107 392.9 426 50.5
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 8.2e-105 384.8 352 57.1
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 8.2e-105 384.8 422 50.0
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 8.2e-105 384.8 411 49.9
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 5.3e-104 382.1 390 52.1
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 6.9e-104 381.7 437 48.5
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 9.1e-104 381.3 422 49.5
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 4.5e-103 379.0 433 49.2
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 2.2e-102 376.7 417 50.4
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 5.0e-102 375.6 421 49.4
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 5.0e-102 375.6 417 48.0
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 9.4e-101 371.3 400 50.0
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 6.1e-100 368.6 416 47.6
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 1.8e-99 367.1 419 48.4
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 2.3e-99 366.7 456 45.0
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 6.7e-99 365.2 388 50.8
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.7e-99 365.2 418 46.2
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 8.8e-99 364.8 421 46.8
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 1.1e-98 364.4 421 45.4
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 1.5e-98 364.0 417 49.4
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 2.0e-98 363.6 421 46.6
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 3.3e-98 362.8 417 46.5
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 3.3e-98 362.8 414 47.3
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 5.7e-98 362.1 415 49.2
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 5.7e-98 362.1 391 49.4
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 7.4e-98 361.7 418 46.4
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 9.7e-98 361.3 421 47.7
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 4.8e-97 359.0 419 48.0
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 3.1e-96 356.3 415 46.7
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 3.1e-96 356.3 415 46.7
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 1.5e-95 354.0 416 48.6
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 2.0e-95 353.6 415 45.8
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 3.5e-95 352.8 415 46.0
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 1.3e-94 350.9 427 45.4
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 1.7e-94 350.5 420 46.4
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 1.9e-93 347.1 403 48.6
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 5.5e-93 345.5 415 46.0
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.2e-92 344.4 421 48.5
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 1.6e-92 344.0 410 46.6
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 2.1e-92 343.6 418 46.2
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 3.6e-92 342.8 421 48.2
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 4.7e-92 342.4 420 45.7
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 6.1e-92 342.0 407 48.4
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 8.0e-92 341.7 375 47.7
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 8.0e-92 341.7 417 46.5
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 3.9e-91 339.3 418 47.4
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.2e-91 339.0 426 46.5
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 1.1e-90 337.8 419 46.1
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 7.4e-90 335.1 413 45.5
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 9.7e-90 334.7 408 46.3
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 2.8e-89 333.2 420 44.8
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 1.1e-88 331.3 424 45.0
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 1.8e-88 330.5 426 45.3
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 2.4e-88 330.1 426 45.1
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.4e-88 330.1 415 43.6
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 9.1e-88 328.2 382 46.3
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 1.2e-87 327.8 408 44.1
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 1.6e-87 327.4 426 44.8
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.0e-87 327.0 415 44.8
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 5.9e-87 325.5 458 42.4
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 7.7e-87 325.1 423 45.6
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 1.0e-86 324.7 454 42.5
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 3.2e-85 319.7 360 49.4
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 3.6e-84 316.2 421 43.2
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 2.6e-82 310.1 421 45.6
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 2.0e-79 300.4 330 47.6
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 2.7e-79 300.1 418 42.3
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 2.7e-79 300.1 403 42.7
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 7.7e-79 298.5 396 45.5
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 2.5e-77 293.5 418 43.8
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 1.7e-73 280.8 414 40.8
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 7.2e-69 265.4 356 45.8
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 5.4e-64 249.2 144 84.7
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 5.4e-64 249.2 419 38.2
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.0e-62 245.0 417 38.1
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 1.3e-62 244.6 419 37.2
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 9.5e-61 238.4 329 47.1
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 3.4e-58 229.9 205 58.0
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 7.5e-58 228.8 265 49.8
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 9.2e-56 221.9 369 33.9
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 5.0e-54 216.1 344 36.0
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 4.4e-50 203.0 205 48.8
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 4.4e-50 203.0 379 36.4
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 7.5e-42 175.6 327 34.6
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 3.7e-41 173.3 431 29.5
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 1.1e-40 171.8 179 42.5
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 1.3e-38 164.9 430 30.5
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.7e-38 164.5 153 56.2
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 5.1e-38 162.9 432 28.0
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 1.1e-37 161.8 460 27.0
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 7.3e-37 159.1 420 30.0
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 2.2e-33 147.5 391 28.1
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 4.9e-33 146.4 435 29.7
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.1e-31 141.0 488 25.0
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 2.6e-26 124.0 343 28.3
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.3e-22 111.7 195 35.4
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.1e-20 104.4 322 26.4
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-18 97.1 315 29.5
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 1.8e-14 84.7 86 48.8
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 3.9e-14 83.6 76 51.3
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 8.1e-12 75.9 54 57.4
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 6.9e-11 72.8 91 46.2
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.0e-09 68.9 237 26.2
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.2e-08 63.5 59 54.2
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 1.6e-07 61.6 62 46.8


User provided reference genes

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