Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 1.4e-191 672.9 385 100.0
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 4.3e-188 661.4 385 98.2
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 6.2e-179 630.9 385 89.1
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.9e-119 433.3 399 66.7
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.8e-110 402.9 401 61.6
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 8.0e-110 401.4 399 64.2
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 1.8e-109 400.2 399 63.7
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 3.2e-106 389.4 402 60.0
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 3.5e-105 386.0 401 59.6
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 3.9e-104 382.5 394 59.6
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 1.6e-102 377.1 402 58.5
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 2.1e-89 333.6 398 60.3
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 3.6e-86 322.8 386 56.2
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 5.2e-85 318.9 410 57.8
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.7e-83 313.9 400 52.0
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 7.1e-82 308.5 338 55.9
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 2.7e-81 306.6 393 50.1
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.7e-81 306.6 400 51.5
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 3.5e-81 306.2 389 52.2
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 1.7e-80 303.9 343 56.6
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 9.6e-79 298.1 407 53.6
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 9.6e-79 298.1 397 56.4
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 1.2e-78 297.7 395 48.4
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 1.6e-78 297.4 396 49.7
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 1.1e-77 294.7 405 52.8
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 1.1e-77 294.7 389 51.4
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 2.4e-77 293.5 390 54.4
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 5.2e-77 292.4 399 51.1
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 4.4e-76 289.3 403 50.4
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 1.3e-75 287.7 389 47.0
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 1.7e-75 287.3 405 48.6
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 1.7e-75 287.3 399 48.6
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 4.9e-75 285.8 394 49.0
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 4.9e-75 285.8 403 50.1
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 6.4e-75 285.4 425 47.5
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 2.4e-74 283.5 388 53.1
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.2e-74 282.7 412 48.3
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 2.1e-73 280.4 415 48.4
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 1.7e-72 277.3 409 47.2
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 3.9e-72 276.2 428 46.3
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 6.6e-72 275.4 403 49.6
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 1.5e-71 274.2 397 48.1
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.5e-71 274.2 390 49.0
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.9e-71 273.9 385 51.2
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 2.5e-71 273.5 401 46.6
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 5.6e-71 272.3 413 49.4
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 1.3e-70 271.2 378 55.6
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 2.1e-70 270.4 409 47.9
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 3.6e-70 269.6 333 50.8
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 3.6e-70 269.6 389 49.1
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 6.2e-70 268.9 389 47.6
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.1e-69 268.1 392 50.8
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.4e-69 267.7 389 49.1
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 1.4e-69 267.7 406 50.2
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 3.1e-69 266.5 383 52.7
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 7.6e-68 261.9 398 47.0
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 7.6e-68 261.9 407 50.9
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 2.9e-67 260.0 424 44.6
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 6.4e-67 258.8 406 50.5
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 4.2e-66 256.1 388 52.8
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 1.8e-64 250.8 396 47.7
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 2.3e-64 250.4 336 51.5
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 3.0e-64 250.0 402 47.5
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 6.7e-64 248.8 396 46.7
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 1.1e-63 248.1 402 47.3
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 4.3e-63 246.1 344 51.5
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.3e-63 246.1 360 47.5
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 4.3e-63 246.1 187 71.7
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 9.6e-63 245.0 360 47.2
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 9.6e-63 245.0 407 45.7
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.3e-62 244.6 360 47.2
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 2.1e-62 243.8 401 46.6
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 2.1e-62 243.8 407 45.7
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 1.8e-61 240.7 379 47.0
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 2.4e-61 240.4 392 52.0
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 9.0e-61 238.4 400 46.0
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 2.6e-60 236.9 412 42.2
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 1.3e-59 234.6 406 45.6
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.9e-59 233.4 344 47.7
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 2.9e-59 233.4 438 41.6
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.9e-58 230.7 384 43.8
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 1.9e-58 230.7 360 48.6
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 4.2e-58 229.6 439 40.5
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 9.3e-58 228.4 398 44.5
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.1e-57 227.3 323 48.3
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 4.6e-57 226.1 385 44.9
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 6.0e-57 225.7 396 44.2
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 3.9e-56 223.0 323 48.0
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 5.1e-56 222.6 399 47.4
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 8.7e-56 221.9 400 50.0
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 3.3e-55 219.9 365 46.6
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 5.6e-55 219.2 399 45.6
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.4e-55 218.8 357 46.5
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.1e-54 217.2 331 44.7
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 8.2e-54 215.3 387 49.9
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 5.5e-50 202.6 330 45.5
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 7.9e-49 198.7 272 53.3
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 6.7e-48 195.7 394 40.4
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 3.7e-46 189.9 295 51.2
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 5.3e-45 186.0 388 45.6
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 1.5e-44 184.5 398 38.4
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 1.0e-43 181.8 297 43.4
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 8.5e-43 178.7 392 42.6
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 1.1e-42 178.3 314 44.9
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 2.5e-42 177.2 378 41.5
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 7.2e-42 175.6 345 43.2
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 9.3e-42 175.3 395 38.5
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 1.2e-41 174.9 306 45.1
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 1.2e-41 174.9 403 37.5
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 2.1e-41 174.1 371 40.4
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 2.7e-41 173.7 386 40.4
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 2.7e-41 173.7 386 40.4
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 6.1e-41 172.6 342 42.4
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 3.0e-40 170.2 376 40.2
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 4.3e-39 166.4 381 39.1
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 4.3e-39 166.4 408 35.5
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 5.7e-39 166.0 383 39.4
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 1.3e-35 154.8 225 48.4
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 1.7e-35 154.5 252 46.8
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 2.9e-35 153.7 188 54.8
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.2e-33 148.3 432 33.6
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 6.1e-33 146.0 325 36.9
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 8.8e-32 142.1 286 41.6
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 8.8e-32 142.1 286 41.6
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 4.8e-30 136.3 182 53.8
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 5.3e-29 132.9 118 67.8
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 1.5e-28 131.3 277 38.3
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.6e-28 130.6 125 57.6
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 6.7e-24 115.9 396 32.3
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 1.1e-23 115.2 362 32.6
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 1.5e-23 114.8 86 68.6
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 7.0e-21 105.9 221 40.7
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.1e-21 105.5 197 44.2
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.1e-21 105.5 197 44.2
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.5e-18 97.4 202 42.6
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.8e-16 91.3 301 32.2
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.7e-14 84.7 200 37.0
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 1.2e-09 68.6 104 47.1
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.8e-08 64.7 218 29.4
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.0e-08 63.5 197 34.5
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.2e-08 63.2 188 34.6
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.8e-08 62.4 197 34.0
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.5e-07 61.6 197 34.0
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.4e-07 60.5 197 33.5
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.4e-07 60.5 197 33.5
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 7.5e-07 59.3 143 37.8
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 7.5e-07 59.3 86 41.9
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 2.2e-06 57.8 46 69.6


User provided reference genes

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