Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g014840.3 Solanum lycopersicum HOM05D002882 ORTHO05D003127 2.1e-29 131.7 69 100.0
Sopen04g006970 Solanum pennellii HOM05D002882 ORTHO05D003127 2.1e-29 131.7 69 100.0
SalBow8G3098 Salvia bowleyana HOM05D002882 ORTHO05D003127 7.8e-16 86.7 65 70.8
CAN.G696.9 Capsicum annuum HOM05D002882 ORTHO05D003127 1.3e-15 85.9 63 73.0
Solyc11g012600.3 Solanum lycopersicum HOM05D002882 ORTHO05D003127 3.9e-15 84.3 64 68.8
Sopen11g007330 Solanum pennellii HOM05D002882 ORTHO05D003127 3.9e-15 84.3 64 68.8
PGSC0003DMG400013293 Solanum tuberosum HOM05D002232 ORTHO05D002323 5.1e-15 84.0 64 68.8
Oeu047048.1 Olea europaea HOM05D002882 ORTHO05D003127 6.6e-15 83.6 65 64.6
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 1.5e-14 82.4 65 64.6
Migut.M01429 Erythranthe guttata HOM05D002882 ORTHO05D003127 1.9e-14 82.0 65 66.2
HanXRQChr01g0004761 Helianthus annuus HOM05D002882 ORTHO05D003127 1.9e-09 65.5 63 55.6
DCAR_030855 Daucus carota HOM05D002882 ORTHO05D003127 2.7e-08 61.6 62 51.6
QL05p068309 Quercus lobata HOM05D002882 ORTHO05D003127 3.5e-08 61.2 67 50.7
CANSAT56G1012 Cannabis sativa HOM05D002882 ORTHO05D003127 4.6e-08 60.8 67 52.2
Dinv04408 Davidia involucrata HOM05D002882 ORTHO05D003127 4.6e-08 60.8 67 49.3
CiPaw.09G105800 Carya illinoinensis HOM05D002882 ORTHO05D003127 6.0e-08 60.5 67 50.7
PSO541G3989 Papaver somniferum HOM05D002882 ORTHO05D003127 6.0e-08 60.5 67 50.7
PSO675G6750 Papaver somniferum HOM05D002882 ORTHO05D003127 6.0e-08 60.5 67 50.7
Lj4g0011609 Lotus japonicus HOM05D002882 ORTHO05D003127 1.0e-07 59.7 67 49.3
Lalb_Chr07g0187071 Lupinus albus HOM05D002882 ORTHO05D003127 1.0e-07 59.7 66 48.5
TWI38G0237 Tripterygium wilfordii HOM05D002882 ORTHO05D003127 1.0e-07 59.7 67 50.7
vmacro03624 Vaccinium macrocarpon HOM05D002882 ORTHO05D003127 1.0e-07 59.7 66 54.5
vmacro23180 Vaccinium macrocarpon HOM05D002882 ORTHO05D003127 1.0e-07 59.7 66 54.5
Gohir.D12G153000 Gossypium hirsutum HOM05D002882 ORTHO05D003127 1.3e-07 59.3 66 48.5
Gorai.008G165500 Gossypium raimondii HOM05D002882 ORTHO05D003127 1.3e-07 59.3 66 48.5
Lalb_Chr13g0294401 Lupinus albus HOM05D002882 ORTHO05D003127 1.3e-07 59.3 66 47.0
Oeu035471.1 Olea europaea HOM05D002882 ORTHO05D003127 1.3e-07 59.3 67 49.3
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 1.3e-07 59.3 66 51.5
Gohir.A12G149100 Gossypium hirsutum HOM05D002882 ORTHO05D003127 1.8e-07 58.9 66 48.5
Potri.006G017100 Populus trichocarpa HOM05D002882 ORTHO05D003127 1.8e-07 58.9 67 50.7
Prupe.1G224500 Prunus persica HOM05D002882 ORTHO05D003127 1.8e-07 58.9 67 49.3
TWI75G1132 Tripterygium wilfordii HOM05D002882 ORTHO05D003127 1.8e-07 58.9 67 49.3
Glyma.05G148000 Glycine max HOM05D002882 ORTHO05D003127 2.3e-07 58.5 67 47.8
Nn1g07474 Nelumbo nucifera HOM05D002882 ORTHO05D003127 2.3e-07 58.5 67 49.3
Phvul.L002646 Phaseolus vulgaris HOM05D002882 ORTHO05D003127 2.3e-07 58.5 67 49.3
Potri.016G008600 Populus trichocarpa HOM05D002882 ORTHO05D003127 2.3e-07 58.5 66 51.5
HPP92_007896 Vanilla planifolia HOM05D002882 ORTHO05D003127 2.3e-07 58.5 67 49.3
BcaB03g12073 Brassica carinata HOM05D002882 ORTHO05D003127 3.0e-07 58.2 67 47.8
BcaC01g01622 Brassica carinata HOM05D002882 ORTHO05D003127 3.0e-07 58.2 67 47.8
BcaC05g26548 Brassica carinata HOM05D002882 ORTHO05D003127 3.0e-07 58.2 67 47.8
BcaC05g26741 Brassica carinata HOM05D002882 ORTHO05D003127 3.0e-07 58.2 67 47.8
A07p11910 Brassica napus HOM05D002882 ORTHO05D003127 3.0e-07 58.2 67 47.8
A09p38600 Brassica napus HOM05D002882 ORTHO05D003127 3.0e-07 58.2 67 47.8
C05p26050 Brassica napus HOM05D002882 ORTHO05D003127 3.0e-07 58.2 67 47.8
C07p17860 Brassica napus HOM05D002882 ORTHO05D003127 3.0e-07 58.2 67 47.8
BolC5t31324H Brassica oleracea HOM05D002882 ORTHO05D003127 3.0e-07 58.2 67 47.8
BolC7t42292H Brassica oleracea HOM05D002882 ORTHO05D003127 3.0e-07 58.2 67 47.8
Thhalv10009274m.g Eutrema salsugineum HOM05D002882 ORTHO05D003127 3.0e-07 58.2 67 47.8
Thhalv10009276m.g Eutrema salsugineum HOM05D002882 ORTHO05D003127 3.9e-07 57.8 67 47.8
MD13G1120700 Malus domestica HOM05D002882 ORTHO05D003127 3.9e-07 57.8 67 47.8
Manes.13G010602 Manihot esculenta HOM05D002882 ORTHO05D003127 3.9e-07 57.8 67 47.8
Solyc05g015530.3 Solanum lycopersicum HOM05D002882 ORTHO05D003127 3.9e-07 57.8 67 47.8
Sopen12g034980 Solanum pennellii HOM05D002882 ORTHO05D003127 3.9e-07 57.8 67 47.8
THA.LOC104807127 Tarenaya hassleriana HOM05D002882 ORTHO05D003127 3.9e-07 57.8 66 50.0
THA.LOC104807522 Tarenaya hassleriana HOM05D002882 ORTHO05D003127 3.9e-07 57.8 67 49.3
arahy.Tifrunner.gnm1.ann1.CG2Z4D Arachis hypogaea HOM05D002882 ORTHO05D003127 5.1e-07 57.4 66 48.5
arahy.Tifrunner.gnm1.ann1.ZB5YIW Arachis hypogaea HOM05D002882 ORTHO05D003127 5.1e-07 57.4 66 48.5
CDE04G3034 Ceratophyllum demersum HOM05D002882 ORTHO05D003127 5.1e-07 57.4 67 49.3
Dinv17570 Davidia involucrata HOM05D002882 ORTHO05D003127 5.1e-07 57.4 67 47.8
ECA246G4694 Erigeron canadensis HOM05D002882 ORTHO05D003127 5.1e-07 57.4 67 47.8
Gohir.A03G125300 Gossypium hirsutum HOM05D002882 ORTHO05D003127 5.1e-07 57.4 67 47.8
Gohir.D02G148066 Gossypium hirsutum HOM05D002882 ORTHO05D003127 5.1e-07 57.4 67 47.8
PGSC0003DMG402034311 Solanum tuberosum HOM05D002882 ORTHO05D003127 5.1e-07 57.4 66 48.5
CiPaw.06G103700 Carya illinoinensis HOM05D002882 ORTHO05D003127 6.7e-07 57.0 67 47.8
CDE07G2053 Ceratophyllum demersum HOM05D002882 ORTHO05D003127 6.7e-07 57.0 67 50.7
DCAR_016387 Daucus carota HOM05D002882 ORTHO05D003127 6.7e-07 57.0 69 49.3
Duzib251G0063 Durio zibethinus HOM05D002882 ORTHO05D003127 6.7e-07 57.0 67 47.8
FvH4_4g23610 Fragaria vesca HOM05D002882 ORTHO05D003127 6.7e-07 57.0 67 47.8
Gohir.A01G154400 Gossypium hirsutum HOM05D002882 ORTHO05D003127 6.7e-07 57.0 65 46.2
Gorai.005G165800 Gossypium raimondii HOM05D002882 ORTHO05D003127 6.7e-07 57.0 68 48.5
MBI19_g07167_MAGBIO Magnolia biondii HOM05D002882 ORTHO05D003127 6.7e-07 57.0 67 47.8
Nn3g16443 Nelumbo nucifera HOM05D002882 ORTHO05D003127 6.7e-07 57.0 67 49.3
Nitab4.5_0002317g0010 Nicotiana tabacum HOM05D002882 ORTHO05D003127 6.7e-07 57.0 67 46.3
Rhsim12G0092300 Rhododendron simsii HOM05D002882 ORTHO05D003127 6.7e-07 57.0 67 47.8
Sed0013705 Sechium edule HOM05D002882 ORTHO05D003127 6.7e-07 57.0 67 49.3
Thecc.02G206200 Theobroma cacao HOM05D002882 ORTHO05D003127 6.7e-07 57.0 67 47.8
TWI36G1708 Tripterygium wilfordii HOM05D002882 ORTHO05D003127 6.7e-07 57.0 67 46.3
GSVIVG01010500001 Vitis vinifera HOM05D000160 ORTHO05D000496 6.7e-07 57.0 67 47.8
BolC3t19658H Brassica oleracea HOM05D002882 ORTHO05D003127 8.7e-07 56.6 67 47.8
CSS0003576 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 8.7e-07 56.6 67 46.3
CsaV3_6G007080 Cucumis sativus L. HOM05D002882 ORTHO05D003127 8.7e-07 56.6 67 47.8
RcHm_v2.0_Chr4g0430041 Rosa chinensis HOM05D002882 ORTHO05D003127 8.7e-07 56.6 67 46.3
THA.LOC104825496 Tarenaya hassleriana HOM05D002882 ORTHO05D003127 8.7e-07 56.6 67 49.3
TAR627G0864 Trochodendron aralioides HOM05D002882 ORTHO05D003127 8.7e-07 56.6 66 48.5
Aa31LG4G12570 Aethionema arabicum HOM05D002882 ORTHO05D003127 1.1e-06 56.2 67 47.8
Aa31LG7G9870 Aethionema arabicum HOM05D002882 ORTHO05D003127 1.1e-06 56.2 66 50.0
BcaC05g26738 Brassica carinata HOM05D002882 ORTHO05D003127 1.1e-06 56.2 66 47.0
A08p26410 Brassica napus HOM05D002882 ORTHO05D003127 1.1e-06 56.2 66 47.0
A09p38620 Brassica napus HOM05D002882 ORTHO05D003127 1.1e-06 56.2 66 47.0
C03p73670 Brassica napus HOM05D002882 ORTHO05D003127 1.1e-06 56.2 66 47.0
C05p26030 Brassica napus HOM05D002882 ORTHO05D003127 1.1e-06 56.2 66 47.0
BolC5t31322H Brassica oleracea HOM05D002882 ORTHO05D003127 1.1e-06 56.2 66 47.0
BraA08t34592Z Brassica rapa HOM05D002882 ORTHO05D003127 1.1e-06 56.2 66 47.0
BraA09t39365Z Brassica rapa HOM05D002882 ORTHO05D003127 1.1e-06 56.2 66 47.0
BraA09t39367Z Brassica rapa HOM05D002882 ORTHO05D003127 1.1e-06 56.2 66 47.0
Eucgr.B03504 Eucalyptus grandis HOM05D002882 ORTHO05D003127 1.1e-06 56.2 67 47.8
Lalb_Chr12g0206061 Lupinus albus HOM05D002882 ORTHO05D003127 1.1e-06 56.2 66 47.0
Oeu004455.1 Olea europaea HOM05D002882 ORTHO05D003127 1.1e-06 56.2 67 47.8
AL1G40730 Arabidopsis lyrata HOM05D002882 ORTHO05D003127 1.5e-06 55.8 67 46.3
AL1G40750 Arabidopsis lyrata HOM05D002882 ORTHO05D003127 1.5e-06 55.8 67 46.3
AT1G27330 Arabidopsis thaliana HOM05D002882 ORTHO05D003127 1.5e-06 55.8 67 46.3
AT1G27350 Arabidopsis thaliana HOM05D002882 ORTHO05D003127 1.5e-06 55.8 67 46.3
Carub.0001s2586 Capsella rubella HOM05D002882 ORTHO05D003127 1.5e-06 55.8 67 46.3
Carub.0001s2588 Capsella rubella HOM05D002882 ORTHO05D003127 1.5e-06 55.8 67 46.3
Migut.K00953 Erythranthe guttata HOM05D002882 ORTHO05D003127 1.5e-06 55.8 67 46.3
Manes.12G009900 Manihot esculenta HOM05D002882 ORTHO05D003127 1.5e-06 55.8 67 46.3
Oeu005006.1 Olea europaea HOM05D002882 ORTHO05D003127 1.5e-06 55.8 69 49.3
PSO017G4765 Papaver somniferum HOM05D002882 ORTHO05D003127 1.5e-06 55.8 67 47.8
PSO478G1706 Papaver somniferum HOM05D002882 ORTHO05D003127 1.5e-06 55.8 67 47.8
PGR102G2921 Punica granatum HOM05D002882 ORTHO05D003127 1.5e-06 55.8 67 47.8
THA.LOC109116983 Tarenaya hassleriana HOM05D002882 ORTHO05D003127 1.5e-06 55.8 65 49.2
Gohir.D01G146600 Gossypium hirsutum HOM05D002882 ORTHO05D003127 1.9e-06 55.5 67 46.3
Peaxi162Scf00518g00316 Petunia axillaris HOM05D002882 ORTHO05D003127 1.9e-06 55.5 66 47.0
Sed0017260 Sechium edule HOM05D002882 ORTHO05D003127 1.9e-06 55.5 67 46.3
vmacro16103 Vaccinium macrocarpon HOM05D002882 ORTHO05D003127 1.9e-06 55.5 66 47.0
Cc11_g17020 Coffea canephora HOM05D002882 ORTHO05D003127 2.5e-06 55.1 66 48.5
Duzib248G1247 Durio zibethinus HOM05D002882 ORTHO05D003127 2.5e-06 55.1 67 46.3
unitig_22.g6403 Utricularia gibba HOM05D003418 ORTHO05D003127 2.5e-06 55.1 66 48.5
Actinidia20716 Actinidia chinensis HOM05D002882 ORTHO05D003127 3.3e-06 54.7 67 44.8
Ciclev10033270m.g Citrus clementina HOM05D002882 ORTHO05D003127 3.3e-06 54.7 67 47.8
Duzib268G0405 Durio zibethinus HOM05D002882 ORTHO05D003127 3.3e-06 54.7 67 46.3
Gorai.002G182300 Gossypium raimondii HOM05D002882 ORTHO05D003127 3.3e-06 54.7 67 46.3
Os11g0637501 Oryza sativa ssp. japonica HOM05D002882 ORTHO05D003127 3.3e-06 54.7 67 46.3
PGR119G2350 Punica granatum HOM05D002882 ORTHO05D003127 3.3e-06 54.7 67 44.8
TPR.G17098 Trifolium pratense HOM05D002882 ORTHO05D003127 3.3e-06 54.7 67 47.8
Atru.chr12.733 Acer truncatum HOM05D002882 ORTHO05D003127 4.3e-06 54.3 67 47.8
Actinidia09644 Actinidia chinensis HOM05D002882 ORTHO05D003127 4.3e-06 54.3 67 44.8
Aqoxy5G03331 Aquilegia oxysepala HOM05D002882 ORTHO05D003127 4.3e-06 54.3 67 44.8
CSS0005957 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 4.3e-06 54.3 62 51.6
CSS0019645 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 4.3e-06 54.3 62 51.6
CSS0030963 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 4.3e-06 54.3 62 51.6
CANSAT01G2319 Cannabis sativa HOM05D002882 ORTHO05D003127 4.3e-06 54.3 67 44.8
CsaV3_4G002750 Cucumis sativus L. HOM05D002882 ORTHO05D003127 4.3e-06 54.3 67 46.3
Hma1.2p1_0065F.1_g035360 Hydrangea macrophylla HOM05D002882 ORTHO05D003127 4.3e-06 54.3 66 47.0
Lsat_1_v5_gn_3_30780 Lactuca sativa HOM05D002882 ORTHO05D003127 4.3e-06 54.3 67 47.8
SalBow2G3348 Salvia bowleyana HOM05D002882 ORTHO05D003127 4.3e-06 54.3 68 45.6
Actinidia36810 Actinidia chinensis HOM05D002882 ORTHO05D003127 5.6e-06 53.9 67 47.8
CSS0030072 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 5.6e-06 53.9 67 46.3
CARHR026930 Cardamine hirsuta HOM05D002882 ORTHO05D003127 5.6e-06 53.9 66 45.5
CiPaw.05G108400 Carya illinoinensis HOM05D002882 ORTHO05D003127 5.6e-06 53.9 67 44.8
Duzib235G1254 Durio zibethinus HOM05D002882 ORTHO05D003127 5.6e-06 53.9 66 43.9
Nitab4.5_0001109g0100 Nicotiana tabacum HOM05D002882 ORTHO05D003127 5.6e-06 53.9 38 78.9
PGR004G1099 Punica granatum HOM05D002882 ORTHO05D003127 5.6e-06 53.9 68 44.1
COL.COLO4_20417 Corchorus olitorius HOM05D002882 ORTHO05D003127 7.4e-06 53.5 66 45.5
Os12g0514100 Oryza sativa ssp. japonica HOM05D002882 ORTHO05D003127 7.4e-06 53.5 67 46.3
QL03p052439 Quercus lobata HOM05D002882 ORTHO05D003127 7.4e-06 53.5 67 43.3
Sed0006820 Sechium edule HOM05D002882 ORTHO05D003127 7.4e-06 53.5 67 46.3
Zm00001eb325710 Zea mays HOM05D002882 ORTHO05D003127 7.4e-06 53.5 66 43.9
Ciclev10017411m.g Citrus clementina HOM05D002882 ORTHO05D003127 9.6e-06 53.1 67 44.8
Dinv23154 Davidia involucrata HOM05D002882 ORTHO05D003127 9.6e-06 53.1 67 44.8
Zm00001eb107890 Zea mays HOM05D002882 ORTHO05D003127 9.6e-06 53.1 66 42.4
Zm00001eb115230 Zea mays HOM05D002882 ORTHO05D003127 9.6e-06 53.1 67 44.8
Zm00001eb264480 Zea mays HOM05D002882 ORTHO05D003127 9.6e-06 53.1 67 47.8


User provided reference genes

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