Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 1.6e-257 892.1 421 100.0
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 7.9e-252 873.2 421 97.6
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 3.3e-250 867.8 412 98.8
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 2.5e-237 825.1 422 92.4
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 1.0e-227 793.1 456 83.3
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 2.6e-210 735.3 419 81.4
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 1.3e-209 733.0 419 80.4
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 5.9e-207 724.2 418 79.4
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 3.6e-204 714.9 419 78.5
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 8.0e-204 713.8 419 78.0
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 1.4e-203 713.0 413 79.9
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 1.8e-203 712.6 419 79.0
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 3.0e-203 711.8 418 78.7
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 6.8e-203 710.7 420 78.3
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 8.8e-203 710.3 419 79.0
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 1.2e-202 709.9 419 78.3
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 1.2e-202 709.9 420 78.8
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 3.4e-202 708.4 418 78.2
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 3.4e-202 708.4 400 82.0
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 9.8e-202 706.8 418 78.0
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 1.1e-200 703.4 419 77.8
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 1.8e-200 702.6 419 75.7
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 5.4e-200 701.0 418 78.0
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 9.1e-200 700.3 419 77.8
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 1.6e-199 699.5 419 77.8
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 4.5e-199 698.0 419 77.8
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 1.0e-198 696.8 419 75.9
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 1.3e-198 696.4 418 76.8
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 2.3e-198 695.7 459 72.5
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 2.9e-198 695.3 418 77.3
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 2.9e-198 695.3 418 77.0
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 3.8e-198 694.9 424 77.8
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 5.0e-198 694.5 417 77.5
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 8.6e-198 693.7 446 73.1
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 1.1e-197 693.3 420 77.9
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 1.1e-197 693.3 419 76.8
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.5e-197 693.0 419 75.4
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 5.5e-197 691.0 420 76.4
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 7.2e-197 690.6 418 76.6
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 7.2e-197 690.6 446 72.9
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 1.6e-196 689.5 419 76.4
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 2.1e-196 689.1 419 75.9
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 2.8e-196 688.7 418 74.9
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 3.6e-196 688.3 419 76.8
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 6.1e-196 687.6 420 76.4
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 8.0e-196 687.2 417 76.3
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 1.0e-195 686.8 419 75.9
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 1.0e-195 686.8 417 74.8
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 1.4e-195 686.4 418 76.3
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 1.8e-195 686.0 419 74.9
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 6.8e-195 684.1 417 75.8
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 8.8e-195 683.7 418 74.2
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 8.8e-195 683.7 418 75.8
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 1.2e-194 683.3 417 74.8
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 1.5e-194 682.9 420 74.5
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 2.6e-194 682.2 419 75.4
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 4.4e-194 681.4 419 75.7
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 5.7e-194 681.0 418 73.9
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 7.5e-194 680.6 417 74.1
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 2.2e-193 679.1 416 73.8
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 4.9e-193 677.9 416 74.3
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 6.3e-193 677.6 417 73.9
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 3.1e-192 675.2 417 74.8
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 3.1e-192 675.2 418 74.4
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 4.1e-192 674.9 416 73.8
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 9.2e-192 673.7 422 74.6
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 9.2e-192 673.7 416 73.8
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 9.2e-192 673.7 417 74.3
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 9.2e-192 673.7 429 74.6
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 1.6e-191 672.9 416 74.5
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.7e-191 672.2 417 74.3
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 2.7e-191 672.2 417 74.3
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 3.5e-191 671.8 416 73.3
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 3.5e-191 671.8 415 74.9
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.3e-190 669.8 417 74.1
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 5.0e-190 667.9 504 65.7
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 8.6e-190 667.2 416 73.1
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 9.5e-189 663.7 415 73.0
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 1.2e-188 663.3 415 72.3
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 1.2e-188 663.3 416 71.9
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 3.6e-188 661.8 417 73.6
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 1.0e-187 660.2 416 72.1
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 1.4e-187 659.8 452 69.5
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 2.3e-187 659.1 416 71.6
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 2.3e-187 659.1 417 73.6
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 8.9e-187 657.1 425 71.1
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 1.5e-186 656.4 415 70.8
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 2.0e-186 656.0 416 70.9
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 4.4e-186 654.8 408 75.7
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 5.7e-186 654.4 416 71.4
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 9.8e-186 653.7 417 73.1
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 3.7e-185 651.7 426 71.1
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 6.4e-185 651.0 416 71.2
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 1.8e-184 649.4 397 76.3
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 2.7e-183 645.6 402 73.4
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 5.9e-183 644.4 419 71.4
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 5.9e-183 644.4 402 73.4
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 7.8e-183 644.0 395 74.4
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 3.9e-182 641.7 401 73.3
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 8.6e-182 640.6 401 73.1
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 8.6e-182 640.6 406 73.9
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 5.2e-179 631.3 432 70.1
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 1.2e-178 630.2 418 67.2
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 2.9e-177 625.5 420 66.7
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 1.9e-176 622.9 456 66.2
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 1.3e-174 616.7 426 68.1
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 1.7e-174 616.3 418 70.6
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 2.7e-167 592.4 419 68.5
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 1.0e-166 590.5 401 70.3
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 5.8e-162 574.7 419 67.3
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 5.4e-160 568.2 416 62.7
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 1.9e-157 559.7 419 62.8
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 4.4e-154 548.5 417 62.6
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 3.2e-152 542.3 438 63.0
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 5.4e-152 541.6 300 81.0
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 7.1e-152 541.2 371 69.3
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 1.6e-151 540.0 418 62.2
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 8.7e-150 534.3 358 66.8
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 2.5e-149 532.7 419 64.0
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 3.9e-142 508.8 358 65.6
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 1.8e-139 500.0 421 55.3
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 7.6e-130 468.0 269 80.3
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 1.4e-123 447.2 471 52.9
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 3.4e-122 442.6 467 52.5
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 7.2e-120 434.9 468 47.9
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 9.3e-120 434.5 471 48.2
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 2.6e-109 399.8 422 49.3
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 6.0e-42 176.0 115 67.0
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 2.4e-30 137.5 82 76.8
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 6.4e-28 129.4 115 53.0
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 1.9e-27 127.9 97 61.9
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 5.1e-25 119.8 89 62.9
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 5.1e-25 119.8 89 62.9
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 4.9e-20 103.2 138 44.9
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.1e-15 87.8 55 69.1
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 6.2e-15 86.3 69 58.0
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 5.3e-14 83.2 66 60.6
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 3.4e-13 80.5 69 55.1
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 3.8e-12 77.0 64 57.8
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.2e-10 72.0 68 51.5
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 8.2e-07 59.3 121 31.4
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 3.1e-06 57.4 36 63.9
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 5.3e-06 56.6 121 32.2


User provided reference genes

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