Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 6.7e-136 487.3 233 100.0
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 1.1e-64 250.8 123 99.2
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 1.4e-64 250.4 123 99.2
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.6e-63 246.1 123 97.6
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.3e-62 243.8 122 96.7
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 2.9e-62 242.7 123 96.7
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 3.8e-62 242.3 123 95.9
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.1e-61 240.7 122 95.1
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 3.5e-60 235.7 123 95.1
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 7.6e-55 218.0 114 91.2
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 8.4e-54 214.5 115 87.8
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 1.2e-52 210.7 115 87.0
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 2.1e-52 209.9 114 87.7
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 2.7e-52 209.5 114 88.6
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 7.9e-52 208.0 115 88.7
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 2.3e-51 206.5 111 87.4
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 3.9e-51 205.7 111 87.4
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 5.1e-51 205.3 114 83.3
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 1.5e-50 203.8 141 72.3
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 1.5e-50 203.8 111 86.5
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 1.9e-50 203.4 115 83.5
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 2.5e-50 203.0 115 86.1
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 5.6e-50 201.8 113 85.0
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 5.6e-50 201.8 114 83.3
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 5.6e-50 201.8 114 82.5
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 5.6e-50 201.8 114 82.5
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 7.4e-50 201.4 113 84.1
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 9.6e-50 201.1 112 83.9
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 1.6e-49 200.3 111 85.6
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 2.8e-49 199.5 112 83.9
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 2.8e-49 199.5 116 82.8
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 2.8e-49 199.5 111 85.6
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 3.7e-49 199.1 114 82.5
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 3.7e-49 199.1 112 82.1
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 3.7e-49 199.1 109 87.2
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 3.7e-49 199.1 115 81.7
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 4.8e-49 198.7 115 81.7
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 4.8e-49 198.7 114 81.6
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 6.2e-49 198.4 117 78.6
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 8.2e-49 198.0 113 83.2
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 1.1e-48 197.6 117 78.6
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 1.1e-48 197.6 111 82.9
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 1.8e-48 196.8 116 77.6
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 2.4e-48 196.4 108 87.0
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 2.4e-48 196.4 114 78.9
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 2.4e-48 196.4 115 79.1
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 3.1e-48 196.1 117 76.9
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 3.1e-48 196.1 111 82.0
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 3.1e-48 196.1 112 83.0
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 4.0e-48 195.7 117 79.5
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 5.3e-48 195.3 112 80.4
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 6.9e-48 194.9 113 80.5
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 6.9e-48 194.9 114 79.8
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 6.9e-48 194.9 114 79.8
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 1.2e-47 194.1 112 83.0
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 1.5e-47 193.7 120 77.5
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 5.8e-47 191.8 114 80.7
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 1.0e-46 191.0 111 80.2
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 1.0e-46 191.0 118 77.1
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 1.7e-46 190.3 127 72.4
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 1.7e-46 190.3 108 82.4
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 2.2e-46 189.9 111 80.2
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 2.2e-46 189.9 115 78.3
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 2.9e-46 189.5 115 80.0
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 3.8e-46 189.1 111 81.1
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 3.8e-46 189.1 114 78.1
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 8.4e-46 188.0 115 76.5
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 1.9e-45 186.8 114 76.3
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 2.5e-45 186.4 114 77.2
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 2.5e-45 186.4 137 69.3
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 3.2e-45 186.0 111 76.6
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 4.2e-45 185.7 115 75.7
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 4.2e-45 185.7 114 75.4
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 1.2e-44 184.1 112 75.0
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.6e-44 183.7 115 72.2
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 1.6e-44 183.7 116 75.9
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 1.6e-44 183.7 115 74.8
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 2.1e-44 183.3 109 78.9
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 1.0e-43 181.0 111 74.8
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 1.0e-43 181.0 111 75.7
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 1.3e-43 180.6 111 73.9
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 1.8e-43 180.3 111 73.9
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 1.8e-43 180.3 111 73.9
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 1.8e-43 180.3 112 76.8
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 2.3e-43 179.9 118 74.6
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 3.0e-43 179.5 111 74.8
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 3.0e-43 179.5 111 73.9
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 3.0e-43 179.5 111 73.0
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 3.0e-43 179.5 138 65.2
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 1.9e-42 176.8 117 71.8
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 2.5e-42 176.4 112 71.4
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 2.5e-42 176.4 120 70.8
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 5.7e-42 175.3 111 72.1
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 5.7e-42 175.3 111 72.1
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 6.3e-41 171.8 111 71.2
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.8e-40 170.2 126 65.1
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 3.1e-40 169.5 101 75.2
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 6.9e-40 168.3 111 70.3
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 1.5e-39 167.2 100 78.0
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 2.0e-39 166.8 132 61.4
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 5.0e-38 162.2 108 70.4
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 8.5e-38 161.4 109 69.7
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 7.2e-37 158.3 108 69.4
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 4.3e-34 149.1 83 80.7
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 7.4e-34 148.3 108 67.6
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 7.4e-34 148.3 108 63.0
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 2.2e-33 146.7 106 64.2
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 2.8e-33 146.4 115 61.7
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 3.7e-33 146.0 85 76.5
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 1.8e-32 143.7 74 93.2
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 2.4e-32 143.3 132 56.8
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 6.9e-32 141.7 84 75.0
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 1.2e-31 141.0 100 72.0
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 2.0e-31 140.2 188 45.2
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 2.2e-30 136.7 88 75.0
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 1.6e-28 130.6 107 57.0
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 1.4e-27 127.5 110 52.7
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 5.1e-27 125.6 67 83.6
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 6.7e-27 125.2 70 85.7
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 1.1e-26 124.4 112 48.2
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 3.3e-26 122.9 75 76.0
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 3.3e-26 122.9 75 76.0
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 9.1e-24 114.8 70 78.6
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.5e-23 114.0 74 70.3
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 2.2e-22 110.2 74 63.5
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 4.2e-21 105.9 118 45.8
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 7.2e-21 105.1 61 82.0
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 5.2e-19 99.0 57 75.4
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 1.1e-18 97.8 78 59.0
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 2.0e-18 97.1 135 37.0
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 7.4e-18 95.1 56 76.8
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 1.3e-17 94.4 54 83.3
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 1.1e-13 81.3 48 81.2
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 1.6e-12 77.4 41 80.5
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 4.4e-10 69.3 58 58.6
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 4.8e-09 65.9 60 55.0
CARHR125830 Cardamine hirsuta HOM05D005610 ORTHO05D006181 1.0e-06 58.2 38 63.2


User provided reference genes

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