Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g006800 Solanum pennellii HOM05D001859 ORTHO05D001836 1.7e-42 175.6 93 100.0
PGSC0003DMG400023561 Solanum tuberosum HOM05D001859 ORTHO05D001836 2.0e-38 162.2 93 82.8
Nitab4.5_0018980g0010 Nicotiana tabacum HOM05D001859 ORTHO05D001836 9.6e-17 90.1 78 61.5
SalBow8G3831 Salvia bowleyana HOM05D001859 ORTHO05D001836 1.6e-16 89.4 91 54.9
Nn1g07328 Nelumbo nucifera HOM05D001859 ORTHO05D001836 8.1e-16 87.0 102 47.1
Lalb_Chr18g0056891 Lupinus albus HOM05D001859 ORTHO05D001836 4.0e-15 84.7 113 41.6
Hma1.2p1_0298F.1_g117270 Hydrangea macrophylla HOM05D001859 ORTHO05D001836 8.9e-15 83.6 109 42.2
TAR624G0820 Trochodendron aralioides HOM05D001859 ORTHO05D001836 1.5e-14 82.8 97 50.5
Duzib235G0175 Durio zibethinus HOM05D001859 ORTHO05D001836 2.0e-14 82.4 108 44.4
Nn2g13510 Nelumbo nucifera HOM05D001859 ORTHO05D001836 2.0e-14 82.4 105 42.9
Nn1g03351 Nelumbo nucifera HOM05D001859 ORTHO05D001836 1.3e-13 79.7 104 43.3
Nitab4.5_0008006g0070 Nicotiana tabacum HOM05D001859 ORTHO05D001836 1.3e-13 79.7 83 55.4
Peaxi162Scf00442g00052 Petunia axillaris HOM05D001859 ORTHO05D001836 1.7e-13 79.3 103 44.7
MD10G1329600 Malus domestica HOM05D001859 ORTHO05D001836 2.2e-13 79.0 109 41.3
TPR.G37073 Trifolium pratense HOM05D001859 ORTHO05D001836 2.2e-13 79.0 97 48.5
CSS0035216 Camellia sinensis var. sinensis HOM05D001859 ORTHO05D001836 2.9e-13 78.6 116 38.8
Gohir.D06G159000 Gossypium hirsutum HOM05D001859 ORTHO05D001836 3.8e-13 78.2 111 45.0
Gorai.010G185700 Gossypium raimondii HOM05D001859 ORTHO05D001836 3.8e-13 78.2 111 45.0
CDE04G2569 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 4.9e-13 77.8 92 46.7
Gohir.A06G152600 Gossypium hirsutum HOM05D001859 ORTHO05D001836 4.9e-13 77.8 111 45.9
Medtr2g025410 Medicago truncatula HOM05D001859 ORTHO05D001836 4.9e-13 77.8 121 43.0
TAR626G0321 Trochodendron aralioides HOM05D001859 ORTHO05D001836 4.9e-13 77.8 111 42.3
VMungo1215G2321 Vigna mungo HOM05D001859 ORTHO05D001836 4.9e-13 77.8 110 40.9
MELO3C021703.2 Cucumis melo HOM05D001859 ORTHO05D001836 6.4e-13 77.4 97 45.4
Rhsim13G0148000 Rhododendron simsii HOM05D001859 ORTHO05D001836 8.4e-13 77.0 104 43.3
arahy.Tifrunner.gnm1.ann1.972LPJ Arachis hypogaea HOM05D001859 ORTHO05D001836 1.1e-12 76.6 128 39.1
MD05G1356500 Malus domestica HOM05D001859 ORTHO05D001836 1.4e-12 76.3 113 38.9
Phvul.003G082900 Phaseolus vulgaris HOM05D001859 ORTHO05D001836 1.4e-12 76.3 107 41.1
Thecc.06G231400 Theobroma cacao HOM05D001859 ORTHO05D001836 1.4e-12 76.3 114 43.9
Duzib192G0034 Durio zibethinus HOM05D001859 ORTHO05D001836 1.9e-12 75.9 114 40.4
Glyma.07G264800 Glycine max HOM05D001859 ORTHO05D001836 1.9e-12 75.9 106 41.5
Sc17g0007670 Simmondsia chinensis HOM05D001859 ORTHO05D001836 1.9e-12 75.9 115 37.4
CDE07G1265 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 2.4e-12 75.5 92 45.7
COL.COLO4_31861 Corchorus olitorius HOM05D001859 ORTHO05D001836 2.4e-12 75.5 121 46.3
Duzib160G0325 Durio zibethinus HOM05D001859 ORTHO05D001836 2.4e-12 75.5 112 41.1
Gohir.A05G173500 Gossypium hirsutum HOM05D001859 ORTHO05D001836 2.4e-12 75.5 112 42.0
MBI19_g29448_MAGBIO Magnolia biondii HOM05D001859 ORTHO05D001836 2.4e-12 75.5 100 40.0
Prupe.4G012500 Prunus persica HOM05D001859 ORTHO05D001836 2.4e-12 75.5 116 39.7
Sed0021259 Sechium edule HOM05D001859 ORTHO05D001836 2.4e-12 75.5 89 46.1
arahy.Tifrunner.gnm1.ann1.DG5972 Arachis hypogaea HOM05D001859 ORTHO05D001836 3.2e-12 75.1 126 37.3
MSTRG.7175 Avicennia marina HOM05D001859 ORTHO05D001836 4.2e-12 74.7 121 38.8
Migut.M01381 Erythranthe guttata HOM05D001859 ORTHO05D001836 4.2e-12 74.7 131 43.5
Ca_00711_v3 Cicer arietinum L. HOM05D001859 ORTHO05D001836 9.3e-12 73.6 117 47.9
Hma1.2p1_0405F.1_g145570 Hydrangea macrophylla HOM05D001859 ORTHO05D001836 9.3e-12 73.6 92 39.1
Glyma.17G009200 Glycine max HOM05D001859 ORTHO05D001836 1.2e-11 73.2 109 38.5
Gohir.D05G176500 Gossypium hirsutum HOM05D001859 ORTHO05D001836 1.2e-11 73.2 113 40.7
Gorai.009G181900 Gossypium raimondii HOM05D001859 ORTHO05D001836 1.2e-11 73.2 113 40.7
Rhsim06G0169500 Rhododendron simsii HOM05D001859 ORTHO05D001836 1.2e-11 73.2 107 40.2
SGA_v2.0_scaffold4G01887 Striga asiatica HOM05D001859 ORTHO05D001836 1.2e-11 73.2 127 39.4
Cc09_g01000 Coffea canephora HOM05D001859 ORTHO05D001836 1.6e-11 72.8 116 39.7
MELO3C007428.2 Cucumis melo HOM05D001859 ORTHO05D001836 1.6e-11 72.8 110 39.1
ClCG01G021560 Citrullus lanatus HOM05D001859 ORTHO05D001836 2.1e-11 72.4 110 38.2
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 2.1e-11 72.4 102 43.1
Lsat_1_v5_gn_7_13381 Lactuca sativa HOM05D001859 ORTHO05D001836 2.1e-11 72.4 101 50.5
THA.LOC104818580 Tarenaya hassleriana HOM05D001859 ORTHO05D001836 2.1e-11 72.4 114 42.1
Cpa.g.sc152.64 Carica papaya HOM05D001859 ORTHO05D001836 2.7e-11 72.0 128 36.7
RcHm_v2.0_Chr5g0001691 Rosa chinensis HOM05D001859 ORTHO05D001836 2.7e-11 72.0 123 39.0
Lj4g0021228 Lotus japonicus HOM05D001859 ORTHO05D001836 3.5e-11 71.6 135 34.1
SGA_v2.0_scaffold7G03772 Striga asiatica HOM05D001859 ORTHO05D001836 3.5e-11 71.6 123 41.5
BraA06t24133Z Brassica rapa HOM05D001859 ORTHO05D001836 4.6e-11 71.2 106 42.5
Potri.011G022900 Populus trichocarpa HOM05D001859 ORTHO05D001836 4.6e-11 71.2 125 38.4
vmacro12147 Vaccinium macrocarpon HOM05D001859 ORTHO05D001836 6.0e-11 70.9 111 40.5
Nitab4.5_0001198g0150 Nicotiana tabacum HOM05D001859 ORTHO05D001836 7.8e-11 70.5 120 37.5
Oeu049725.1 Olea europaea HOM05D001859 ORTHO05D001836 7.8e-11 70.5 119 43.7
PGSC0003DMG400013338 Solanum tuberosum HOM05D001859 ORTHO05D001836 7.8e-11 70.5 135 37.0
Haze_06900 Corylus avellana HOM05D001859 ORTHO05D001836 1.0e-10 70.1 110 41.8
Lalb_Chr20g0119161 Lupinus albus HOM05D001859 ORTHO05D001836 1.0e-10 70.1 111 36.0
Peaxi162Scf00990g10013 Petunia axillaris HOM05D001859 ORTHO05D001836 1.0e-10 70.1 100 39.0
QL03p008463 Quercus lobata HOM05D001859 ORTHO05D001836 1.0e-10 70.1 121 33.1
FvH4_3g01120 Fragaria vesca HOM05D001859 ORTHO05D001836 1.7e-10 69.3 117 43.6
Lj6g0027371 Lotus japonicus HOM05D001859 ORTHO05D001836 1.7e-10 69.3 125 34.4
QL10p003470 Quercus lobata HOM05D001859 ORTHO05D001836 1.7e-10 69.3 121 33.1
Sabra11G0013900 Salix brachista HOM05D001859 ORTHO05D001836 1.7e-10 69.3 119 34.5
CiPaw.10G076600 Carya illinoinensis HOM05D001859 ORTHO05D001836 2.3e-10 68.9 111 38.7
Eucgr.E03956 Eucalyptus grandis HOM05D001859 ORTHO05D001836 2.3e-10 68.9 123 37.4
Oeu003171.1 Olea europaea HOM05D001859 ORTHO05D001836 2.3e-10 68.9 118 36.4
Potri.004G001800 Populus trichocarpa HOM05D001859 ORTHO05D001836 2.3e-10 68.9 117 35.9
unitig_92.g28108 Utricularia gibba HOM05D001859 ORTHO05D001836 3.0e-10 68.6 106 39.6
CANSAT56G1712 Cannabis sativa HOM05D001859 ORTHO05D001836 3.9e-10 68.2 135 38.5
Duzib138G0470 Durio zibethinus HOM05D001859 ORTHO05D001836 5.1e-10 67.8 110 35.5
Cfa000121 Carpinus fangiana HOM05D001859 ORTHO05D001836 6.6e-10 67.4 120 36.7
TWI38G2307 Tripterygium wilfordii HOM05D001859 ORTHO05D001836 6.6e-10 67.4 122 36.9
VMungo0540G2178 Vigna mungo HOM05D001859 ORTHO05D001836 6.6e-10 67.4 122 44.3
Glyma.15G113700 Glycine max HOM05D001859 ORTHO05D001836 8.7e-10 67.0 127 41.7
Solyc11g012060.2 Solanum lycopersicum HOM05D001859 ORTHO05D001836 8.7e-10 67.0 137 36.5
TAR627G0807 Trochodendron aralioides HOM05D001859 ORTHO05D001836 8.7e-10 67.0 105 40.0
HanXRQChr15g0470041 Helianthus annuus HOM05D001859 ORTHO05D001836 1.1e-09 66.6 113 45.1
Lalb_Chr15g0087901 Lupinus albus HOM05D001859 ORTHO05D001836 1.1e-09 66.6 112 42.9
Peaxi162Scf00558g00021 Petunia axillaris HOM05D001859 ORTHO05D001836 1.1e-09 66.6 122 44.3
Sopen11g006850 Solanum pennellii HOM05D001859 ORTHO05D001836 1.1e-09 66.6 136 35.3
Nitab4.5_0000143g0420 Nicotiana tabacum HOM05D001859 ORTHO05D001836 1.5e-09 66.2 121 42.1
Aqoxy1G04153 Aquilegia oxysepala HOM05D001859 ORTHO05D001836 1.9e-09 65.9 126 34.9
Psat1g177200 Pisum sativum HOM05D001859 ORTHO05D001836 1.9e-09 65.9 126 33.3
RcHm_v2.0_Chr2g0157771 Rosa chinensis HOM05D001859 ORTHO05D001836 1.9e-09 65.9 106 34.9
Sp1g10690 Schrenkiella parvula HOM05D001859 ORTHO05D001836 1.9e-09 65.9 137 32.1
FAN25G0584 Fragaria x ananassa HOM05D001859 ORTHO05D001836 2.5e-09 65.5 114 38.6
Ciclev10016596m.g Citrus clementina HOM05D001859 ORTHO05D001836 3.3e-09 65.1 115 44.3
Thhalv10024108m.g Eutrema salsugineum HOM05D001859 ORTHO05D001836 3.3e-09 65.1 107 38.3
Lsat_1_v5_gn_5_123300 Lactuca sativa HOM05D001859 ORTHO05D001836 3.3e-09 65.1 116 43.1
QL08p030048 Quercus lobata HOM05D001859 ORTHO05D001836 3.3e-09 65.1 104 35.6
Sed0007035 Sechium edule HOM05D001859 ORTHO05D001836 3.3e-09 65.1 99 38.4
Atru.chr1.2488 Acer truncatum HOM05D001859 ORTHO05D001836 4.3e-09 64.7 127 41.7
BcaB03g13214 Brassica carinata HOM05D001859 ORTHO05D001836 4.3e-09 64.7 136 32.4
TWI63G1105 Tripterygium wilfordii HOM05D001859 ORTHO05D001836 4.3e-09 64.7 121 34.7
unitig_748.g7596 Utricularia gibba HOM05D001859 ORTHO05D001836 4.3e-09 64.7 122 39.3
BcaB08g37434 Brassica carinata HOM05D001859 ORTHO05D001836 5.6e-09 64.3 136 33.8
AT1G12020 Arabidopsis thaliana HOM05D001859 ORTHO05D001836 7.3e-09 63.9 134 32.1
BcaC07g41753 Brassica carinata HOM05D001859 ORTHO05D001836 7.3e-09 63.9 134 33.6
C08p47760 Brassica napus HOM05D001859 ORTHO05D001836 7.3e-09 63.9 134 33.6
BolC8t52313H Brassica oleracea HOM05D001859 ORTHO05D001836 7.3e-09 63.9 134 33.6
CARHR012370 Cardamine hirsuta HOM05D001859 ORTHO05D001836 7.3e-09 63.9 131 32.1
PGR042G2503 Punica granatum HOM05D001859 ORTHO05D001836 7.3e-09 63.9 127 35.4
Sc05g0009560 Simmondsia chinensis HOM05D001859 ORTHO05D001836 7.3e-09 63.9 127 31.5
TWI36G0632 Tripterygium wilfordii HOM05D001859 ORTHO05D001836 9.6e-09 63.5 113 35.4
Thecc.01G184200 Theobroma cacao HOM05D001859 ORTHO05D001836 1.3e-08 63.2 108 36.1
C08p15130 Brassica napus HOM05D001859 ORTHO05D001836 1.6e-08 62.8 132 34.1
BolC8t49143H Brassica oleracea HOM05D001859 ORTHO05D001836 1.6e-08 62.8 132 34.1
A08p33080 Brassica napus HOM05D001859 ORTHO05D001836 2.1e-08 62.4 133 31.6
BraA08t35228Z Brassica rapa HOM05D001859 ORTHO05D001836 2.1e-08 62.4 133 31.6
Ciclev10016686m.g Citrus clementina HOM05D001859 ORTHO05D001836 2.1e-08 62.4 112 32.1
Thhalv10010010m.g Eutrema salsugineum HOM05D001859 ORTHO05D001836 2.1e-08 62.4 138 34.1
Glyma.09G009200 Glycine max HOM05D001859 ORTHO05D001836 2.1e-08 62.4 126 38.9
MD09G1116300 Malus domestica HOM05D001859 ORTHO05D001836 2.1e-08 62.4 121 28.1
vmacro15778 Vaccinium macrocarpon HOM05D001859 ORTHO05D001836 2.1e-08 62.4 108 39.8
Cpa.g.sc132.38 Carica papaya HOM05D001859 ORTHO05D001836 2.8e-08 62.0 115 33.0
Cfa014304 Carpinus fangiana HOM05D001859 ORTHO05D001836 2.8e-08 62.0 107 36.4
Dinv07387 Davidia involucrata HOM05D001859 ORTHO05D001836 2.8e-08 62.0 107 41.1
Prupe.3G208400 Prunus persica HOM05D001859 ORTHO05D001836 2.8e-08 62.0 125 31.2
TWI75G1221 Tripterygium wilfordii HOM05D001859 ORTHO05D001836 2.8e-08 62.0 112 35.7
CARHR049500 Cardamine hirsuta HOM05D001859 ORTHO05D001836 3.6e-08 61.6 102 37.3
Manes.12G058200 Manihot esculenta HOM05D001859 ORTHO05D001836 3.6e-08 61.6 101 36.6
Sed0022678 Sechium edule HOM05D001859 ORTHO05D001836 4.8e-08 61.2 101 34.7
Ah.14g087730 Amaranthus hybridus HOM05D001859 ORTHO05D001836 6.2e-08 60.8 124 31.5
A09p64140 Brassica napus HOM05D001859 ORTHO05D001836 6.2e-08 60.8 133 33.1
BraA09t41760Z Brassica rapa HOM05D001859 ORTHO05D001836 6.2e-08 60.8 133 33.1
Actinidia02325 Actinidia chinensis HOM05D001859 ORTHO05D001836 8.1e-08 60.5 72 41.7
AL1G23260 Arabidopsis lyrata HOM05D001859 ORTHO05D001836 8.1e-08 60.5 132 32.6
AT1G62422 Arabidopsis thaliana HOM05D001859 ORTHO05D001836 8.1e-08 60.5 102 35.3
Carub.0001s1170 Capsella rubella HOM05D001859 ORTHO05D001836 8.1e-08 60.5 142 31.0
Carub.0002s0255 Capsella rubella HOM05D001859 ORTHO05D001836 1.1e-07 60.1 103 33.0
HanXRQChr10g0306251 Helianthus annuus HOM05D001859 ORTHO05D001836 1.1e-07 60.1 120 39.2
AL2G13460 Arabidopsis lyrata HOM05D001859 ORTHO05D001836 1.4e-07 59.7 105 39.0
Eucgr.D01385 Eucalyptus grandis HOM05D001859 ORTHO05D001836 1.4e-07 59.7 107 36.4
ECA234G1243 Erigeron canadensis HOM05D001859 ORTHO05D001836 1.8e-07 59.3 109 33.9
HanXRQChr12g0373731 Helianthus annuus HOM05D001859 ORTHO05D001836 1.8e-07 59.3 106 31.1
BcaC07g41737 Brassica carinata HOM05D001859 ORTHO05D001836 4.0e-07 58.2 132 33.3
Dinv13957 Davidia involucrata HOM05D001859 ORTHO05D001836 4.0e-07 58.2 34 70.6
Phvul.006G144100 Phaseolus vulgaris HOM05D001859 ORTHO05D001836 4.0e-07 58.2 121 37.2
HanXRQChr04g0126821 Helianthus annuus HOM05D001859 ORTHO05D001836 5.3e-07 57.8 117 36.8
Sp2g02190 Schrenkiella parvula HOM05D001859 ORTHO05D001836 5.3e-07 57.8 104 40.4
Dinv08708 Davidia involucrata HOM05D001859 ORTHO05D001836 6.9e-07 57.4 34 64.7
ClCG01G009950 Citrullus lanatus HOM05D001859 ORTHO05D001836 9.0e-07 57.0 33 72.7
MD17G1108000 Malus domestica HOM05D001859 ORTHO05D001836 9.0e-07 57.0 119 26.9
PGR042G3865 Punica granatum HOM05D001859 ORTHO05D001836 9.0e-07 57.0 98 32.7
Gorai.007G169500 Gossypium raimondii HOM05D001859 ORTHO05D001836 2.0e-06 55.8 95 38.9
Ah.09g234320 Amaranthus hybridus HOM05D001859 ORTHO05D001836 2.6e-06 55.5 122 27.0
Gohir.D11G159000 Gossypium hirsutum HOM05D001859 ORTHO05D001836 2.6e-06 55.5 96 40.6
BcaC05g25231 Brassica carinata HOM05D001859 ORTHO05D001836 3.4e-06 55.1 33 69.7
C05p11160 Brassica napus HOM05D001859 ORTHO05D001836 3.4e-06 55.1 33 69.7
BolC5t29862H Brassica oleracea HOM05D001859 ORTHO05D001836 3.4e-06 55.1 33 69.7
Psat4g003520 Pisum sativum HOM05D001859 ORTHO05D001836 3.4e-06 55.1 114 35.1
unitig_32.g11541 Utricularia gibba HOM05D001859 ORTHO05D001836 3.4e-06 55.1 75 44.0
Lsat_1_v5_gn_7_94860 Lactuca sativa HOM05D001859 ORTHO05D001836 4.4e-06 54.7 100 41.0
GSVIVG01007239001 Vitis vinifera HOM05D001859 ORTHO05D001836 5.8e-06 54.3 33 69.7
EL10Ac8g20168 Beta vulgaris HOM05D001859 ORTHO05D001836 9.9e-06 53.5 33 63.6
COL.COLO4_07262 Corchorus olitorius HOM05D001859 ORTHO05D001836 9.9e-06 53.5 117 31.6
Haze_12751 Corylus avellana HOM05D001859 ORTHO05D001836 9.9e-06 53.5 113 37.2
Gohir.A11G152200 Gossypium hirsutum HOM05D001859 ORTHO05D001836 9.9e-06 53.5 96 40.6
THA.LOC104823538 Tarenaya hassleriana HOM05D001859 ORTHO05D001836 9.9e-06 53.5 33 66.7


User provided reference genes

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