Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 3.9e-67 258.5 179 100.0
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 3.9e-67 258.5 179 100.0
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 1.4e-61 240.0 176 94.3
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 2.5e-61 239.2 176 94.9
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 9.3e-61 237.3 176 94.3
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 3.5e-60 235.3 176 92.6
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 3.5e-60 235.3 176 93.8
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.0e-59 233.8 174 93.7
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 2.4e-56 222.6 176 87.5
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 5.3e-56 221.5 176 85.8
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 9.0e-56 220.7 179 84.9
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 9.0e-56 220.7 174 89.7
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 1.2e-55 220.3 179 80.4
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 2.9e-54 215.7 174 83.3
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 3.8e-54 215.3 176 85.2
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 8.4e-54 214.2 174 86.2
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 1.4e-53 213.4 174 83.3
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 1.9e-53 213.0 176 81.2
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.9e-53 213.0 174 81.0
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 2.5e-53 212.6 179 82.7
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 3.2e-53 212.2 174 76.4
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 4.2e-53 211.8 174 80.5
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 5.5e-53 211.5 176 79.5
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 5.5e-53 211.5 173 86.7
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 7.1e-53 211.1 176 77.8
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 7.1e-53 211.1 174 82.2
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 9.3e-53 210.7 174 82.8
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 9.3e-53 210.7 174 83.9
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 1.6e-52 209.9 174 81.6
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 2.1e-52 209.5 179 81.0
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 2.7e-52 209.1 174 82.8
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 3.5e-52 208.8 179 82.1
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 4.6e-52 208.4 174 84.5
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 4.6e-52 208.4 175 61.1
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 6.1e-52 208.0 176 81.8
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 6.1e-52 208.0 177 83.1
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 7.9e-52 207.6 174 83.9
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.3e-51 206.8 174 83.9
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 1.3e-51 206.8 174 83.9
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 1.3e-51 206.8 176 81.8
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 1.8e-51 206.5 174 81.0
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 2.3e-51 206.1 176 79.0
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 2.3e-51 206.1 174 83.9
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 3.9e-51 205.3 174 80.5
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 3.9e-51 205.3 175 80.0
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 3.9e-51 205.3 174 82.2
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 3.9e-51 205.3 174 79.3
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 3.9e-51 205.3 176 82.4
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 5.1e-51 204.9 176 59.1
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 6.7e-51 204.5 174 80.5
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 6.7e-51 204.5 174 81.0
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 1.5e-50 203.4 176 82.4
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 1.5e-50 203.4 174 81.6
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 1.9e-50 203.0 176 78.4
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 1.9e-50 203.0 174 82.8
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 9.7e-50 200.7 176 81.8
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.3e-49 200.3 176 81.8
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 1.6e-49 199.9 177 75.1
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 2.8e-49 199.1 179 78.8
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 2.8e-49 199.1 176 81.2
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 6.3e-49 198.0 176 79.5
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 1.4e-48 196.8 174 81.6
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 1.8e-48 196.4 176 81.2
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 2.4e-48 196.1 176 80.1
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 2.4e-48 196.1 176 78.4
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 3.1e-48 195.7 174 78.2
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 6.9e-48 194.5 174 80.5
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 1.2e-47 193.7 174 79.9
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 1.2e-47 193.7 179 75.4
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 1.2e-47 193.7 174 78.7
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 2.6e-47 192.6 174 79.9
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 1.0e-46 190.7 176 78.4
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 1.0e-46 190.7 191 53.4
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.9e-46 189.1 199 50.8
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 8.5e-46 187.6 174 80.5
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 1.9e-45 186.4 175 77.7
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 2.5e-45 186.0 176 56.2
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 2.5e-45 186.0 176 61.4
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 2.5e-45 186.0 174 78.2
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 1.2e-44 183.7 174 77.0
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 1.6e-44 183.3 174 77.6
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 2.1e-44 183.0 174 55.7
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 2.7e-44 182.6 176 55.1
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 2.7e-44 182.6 176 55.1
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 3.6e-44 182.2 247 44.5
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 1.4e-43 180.3 176 52.3
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 1.1e-42 177.2 175 73.7
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 1.5e-42 176.8 155 82.6
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 3.3e-42 175.6 204 63.2
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 7.4e-42 174.5 159 82.4
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 1.1e-40 170.6 179 50.8
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 4.5e-39 165.2 174 47.1
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 5.9e-39 164.9 175 50.3
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.0e-38 164.1 84 94.0
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 8.5e-38 161.0 174 48.9
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.2e-37 159.1 138 91.3
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 4.2e-37 158.7 173 52.6
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 5.5e-37 158.3 192 67.7
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 9.4e-37 157.5 171 50.3
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 9.4e-37 157.5 174 72.4
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 1.2e-36 157.1 179 46.4
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 3.9e-35 152.1 138 81.2
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 1.3e-33 147.1 177 66.1
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 3.7e-33 145.6 86 77.9
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 4.8e-33 145.2 155 75.5
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 7.0e-32 141.4 138 69.6
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 2.0e-31 139.8 87 73.6
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 2.6e-31 139.4 87 73.6
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 7.7e-31 137.9 87 75.9
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.3e-30 137.1 86 73.3
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.1e-29 134.0 125 76.0
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.5e-29 133.7 87 72.4
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 2.6e-26 122.9 86 65.1
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 7.4e-26 121.3 215 38.1
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.7e-22 110.2 165 40.6
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 2.2e-22 109.8 119 50.4
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 3.8e-22 109.0 120 48.3
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.4e-19 100.5 128 44.5
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 1.3e-14 84.0 115 38.3
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.5e-10 70.5 36 94.4
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 5.7e-10 68.6 98 41.8
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.2e-09 66.6 36 86.1
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 3.7e-09 65.9 36 86.1
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 8.3e-09 64.7 47 63.8
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 4.5e-07 58.9 36 69.4


User provided reference genes

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