Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g006510 Solanum pennellii HOM05D008333 ORTHO05D010371 4.4e-60 234.6 130 100.0
PGSC0003DMG400016257 Solanum tuberosum HOM05D008333 ORTHO05D010371 4.9e-19 98.2 138 42.0
Lj7P401T71 Lonicera japonica HOM05D008333 ORTHO05D010371 4.0e-13 78.6 129 35.7
CSS0029447 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 5.3e-13 78.2 100 38.0
CSS0048142 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 5.3e-13 78.2 100 38.0
Potri.017G077100 Populus trichocarpa HOM05D008333 ORTHO05D010371 5.8e-12 74.7 124 35.5
Rhsim08G0065600 Rhododendron simsii HOM05D008333 ORTHO05D010371 5.8e-12 74.7 131 35.1
Prupe.3G272200 Prunus persica HOM05D008333 ORTHO05D010371 7.6e-12 74.3 114 32.5
Rhsim08G0065000 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.3e-11 73.6 132 34.1
Rhsim08G0065200 Rhododendron simsii HOM05D008333 ORTHO05D010371 4.9e-11 71.6 131 34.4
Actinidia38746 Actinidia chinensis HOM05D008333 ORTHO05D010371 8.4e-11 70.9 120 39.2
FvH4_6g49300 Fragaria vesca HOM05D008333 ORTHO05D010371 2.4e-10 69.3 104 34.6
FAN14G1695 Fragaria x ananassa HOM05D008333 ORTHO05D010371 5.4e-10 68.2 101 35.6
FAN14G3781 Fragaria x ananassa HOM05D000349 ORTHO05D001782 5.4e-10 68.2 101 35.6
COL.COLO4_25183 Corchorus olitorius HOM05D008333 ORTHO05D010371 7.1e-10 67.8 103 36.9
Duzib147G0630 Durio zibethinus HOM05D008333 ORTHO05D010371 7.1e-10 67.8 108 33.3
FvH4_6g49320 Fragaria vesca HOM05D008333 ORTHO05D010371 9.3e-10 67.4 101 35.6
FAN14G5614 Fragaria x ananassa HOM05D008333 ORTHO05D010371 9.3e-10 67.4 101 35.6
Rhsim08G0065900 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.6e-09 66.6 112 33.0
CiPaw.03G030300 Carya illinoinensis HOM05D008333 ORTHO05D010371 7.8e-09 64.3 102 38.2
Rhsim08G0065400 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.7e-08 63.2 102 36.3
Rhsim08G0065500 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.7e-08 63.2 112 32.1
RcHm_v2.0_Chr2g0169181 Rosa chinensis HOM05D008333 ORTHO05D010371 1.7e-08 63.2 101 32.7
Rhsim08G0065300 Rhododendron simsii HOM05D008333 ORTHO05D010371 2.3e-08 62.8 100 36.0
Rhsim08G0065800 Rhododendron simsii HOM05D008333 ORTHO05D010371 2.3e-08 62.8 102 34.3
Rhsim08G0066000 Rhododendron simsii HOM05D008333 ORTHO05D010371 2.3e-08 62.8 112 31.2
RcHm_v2.0_Chr2g0169171 Rosa chinensis HOM05D008333 ORTHO05D010371 2.3e-08 62.8 101 32.7
Thecc.04G074300 Theobroma cacao HOM05D008333 ORTHO05D010371 6.6e-08 61.2 91 37.4
Manes.17G020900 Manihot esculenta HOM05D008333 ORTHO05D010371 8.7e-08 60.8 101 38.6
Gorai.007G297900 Gossypium raimondii HOM05D008333 ORTHO05D010371 1.1e-07 60.5 105 35.2
Gohir.D11G275775 Gossypium hirsutum HOM05D008333 ORTHO05D010371 1.9e-07 59.7 99 36.4
Rhsim08G0065700 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.9e-07 59.7 100 35.0
Rhsim08G0065100 Rhododendron simsii HOM05D008333 ORTHO05D010371 2.5e-07 59.3 100 34.0
CSS0005469 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 3.3e-07 58.9 115 33.9
Gorai.006G024100 Gossypium raimondii HOM05D008333 ORTHO05D010371 5.6e-07 58.2 111 29.7
Gohir.D09G020400 Gossypium hirsutum HOM05D008333 ORTHO05D010371 9.6e-07 57.4 128 27.3
Cfa021167 Carpinus fangiana HOM05D008333 ORTHO05D010371 2.1e-06 56.2 105 31.4
Glyma.18G255500 Glycine max HOM05D008333 ORTHO05D010371 4.8e-06 55.1 100 32.0
QL02p080535 Quercus lobata HOM05D008333 ORTHO05D010371 4.8e-06 55.1 102 31.4
VMungo0464G0738 Vigna mungo HOM05D008333 ORTHO05D010371 4.8e-06 55.1 102 31.4
Haze_14585 Corylus avellana HOM05D008333 ORTHO05D010371 6.2e-06 54.7 99 34.3
Gohir.A09G021000 Gossypium hirsutum HOM05D008333 ORTHO05D010371 6.2e-06 54.7 101 29.7


User provided reference genes

Program Settings