Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 0.0e+00 3410.9 1751 100.0
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 0.0e+00 3315.4 1751 97.7
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 0.0e+00 2800.4 1760 83.0
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 0.0e+00 2240.3 1697 70.8
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 0.0e+00 2147.1 1752 67.0
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 0.0e+00 1911.7 1340 76.0
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 0.0e+00 1318.9 1758 46.6
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 0.0e+00 1263.4 1749 45.3
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 0.0e+00 1246.1 1753 44.3
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 0.0e+00 1143.3 1706 43.3
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 0.0e+00 1138.3 1773 42.1
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 1108.6 1746 41.6
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 1107.4 1724 41.5
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 0.0e+00 1091.3 1777 41.1
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 4.7e-306 1055.4 1691 41.6
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 2.2e-300 1036.6 1328 46.1
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 2.0e-293 1013.4 2065 35.7
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 8.3e-287 991.5 1770 39.4
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 1.6e-285 987.3 1778 39.0
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 3.8e-284 982.6 1775 38.5
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 5.5e-283 978.8 1876 38.3
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 3.4e-280 969.5 1766 38.1
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 6.3e-279 965.3 1204 50.2
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 7.0e-278 961.8 1613 40.5
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 1.2e-277 961.1 1768 38.1
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 3.8e-276 956.1 1285 44.9
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 5.5e-275 952.2 1777 37.4
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 1.2e-274 951.0 1775 37.7
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 1.8e-273 947.2 1771 38.0
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 4.9e-271 939.1 1788 36.9
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 1.8e-270 937.2 1834 37.1
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 3.1e-270 936.4 1860 36.6
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 7.0e-270 935.3 1766 37.8
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 1.2e-269 934.5 1756 37.8
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 2.3e-268 930.2 1767 37.9
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 3.3e-267 926.4 1739 38.0
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 2.0e-264 917.1 1762 35.9
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 5.0e-260 902.5 1790 36.8
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 3.3e-259 899.8 1797 36.7
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 6.2e-258 895.6 1798 36.7
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.4e-257 894.4 1800 36.6
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 2.6e-256 890.2 1403 40.8
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 2.9e-255 886.7 1787 37.0
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 4.3e-251 872.8 1797 36.3
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 2.3e-249 867.1 1780 35.7
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 1.3e-247 861.3 1762 34.9
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 1.3e-247 861.3 1762 34.9
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 4.1e-246 856.3 1780 35.6
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 1.9e-243 847.4 1785 36.5
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 4.3e-243 846.3 1748 35.6
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 1.2e-240 838.2 1784 35.4
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 4.4e-240 836.3 1754 35.9
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 1.1e-238 831.6 1773 35.3
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 9.3e-238 828.6 1763 34.9
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 1.6e-237 827.8 1824 33.6
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 1.3e-236 824.7 1284 39.5
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 2.3e-236 823.9 1257 40.4
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 1.9e-235 820.8 1773 33.8
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 5.6e-235 819.3 1669 34.9
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 2.1e-234 817.4 1781 35.8
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 4.0e-233 813.1 1673 35.3
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 3.4e-232 810.1 1773 35.8
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 3.4e-232 810.1 1745 35.1
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 2.4e-230 803.9 1755 34.9
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 5.4e-230 802.7 1289 38.5
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 7.1e-230 802.4 1348 38.4
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 9.6e-227 792.0 1780 34.9
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 9.9e-224 781.9 1784 34.2
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 3.2e-222 776.9 1738 35.3
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 3.3e-219 766.9 1818 33.2
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 8.1e-218 762.3 1764 34.6
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 2.5e-214 750.7 1772 33.3
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 2.7e-213 747.3 1757 33.8
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 9.6e-211 738.8 1710 34.7
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 2.2e-194 684.5 1761 32.8
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 1.1e-193 682.2 1761 32.9
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 3.1e-193 680.6 901 41.2
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 5.3e-193 679.9 1753 32.4
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 9.1e-193 679.1 1759 33.3
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 9.1e-193 679.1 812 46.6
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 3.4e-192 677.2 1751 33.8
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 5.9e-192 676.4 1757 32.7
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 4.2e-190 670.2 1765 33.7
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 7.2e-190 669.5 1748 32.6
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 2.7e-189 667.5 1756 33.5
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 1.5e-187 661.8 1754 32.8
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 4.4e-187 660.2 1769 33.4
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 7.0e-177 626.3 699 48.4
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 3.5e-176 624.0 1509 33.5
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 3.0e-172 610.9 772 43.1
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 1.2e-165 589.0 1827 30.0
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 2.1e-165 588.2 658 47.7
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 8.8e-164 582.8 637 50.5
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 1.8e-161 575.1 1286 32.7
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 4.9e-154 550.4 1260 32.1
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 4.9e-154 550.4 1756 29.5
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 2.0e-115 422.2 1074 29.8
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 4.9e-98 364.4 679 35.8
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.1e-96 359.0 436 47.0
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 4.6e-96 357.8 1128 31.8
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 1.4e-84 319.7 934 29.1
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 6.1e-80 304.3 828 31.8
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 5.3e-76 291.2 655 33.6
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 3.8e-74 285.0 454 36.3
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 1.8e-68 266.2 843 28.0
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 1.6e-64 253.1 536 31.5
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 4.8e-61 241.5 644 31.1
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 4.1e-60 238.4 614 33.9
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 2.4e-52 212.6 785 28.7
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 3.0e-47 195.7 800 26.4
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.0e-31 144.1 746 25.7
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 8.9e-31 141.0 674 29.1
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 5.4e-28 131.7 133 43.6
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 6.8e-23 114.8 127 42.5
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 1.9e-20 106.7 334 31.7
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 1.5e-14 87.0 82 57.3
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 1.3e-13 84.0 125 42.4
Peaxi162Scf00060g00125 Petunia axillaris HOM05D006083 ORTHO05D007634 1.7e-10 73.6 117 47.9
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 1.5e-09 70.5 102 43.1
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 1.5e-09 70.5 93 45.2
Ca_29897_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 4.3e-09 68.9 111 39.6
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 6.2e-08 65.1 131 30.5
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 3.1e-07 62.8 393 28.8


User provided reference genes

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