Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 0.0e+00 2317.0 1197 100.0
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 0.0e+00 2122.8 1211 92.2
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 0.0e+00 1580.5 1252 71.0
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 0.0e+00 1573.5 1254 71.0
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 0.0e+00 1522.7 803 97.1
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 0.0e+00 1521.5 1286 67.5
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 0.0e+00 1095.1 1122 60.2
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 6.9e-277 958.0 1309 49.7
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 2.7e-204 716.8 1352 40.1
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.6e-188 664.5 1185 43.8
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 1.2e-172 611.7 1372 36.7
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 7.4e-170 602.4 1372 36.4
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 7.9e-156 555.8 1130 40.9
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 4.2e-141 506.9 1369 33.7
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 3.9e-139 500.4 1383 35.1
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 6.7e-139 499.6 1354 34.9
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 9.7e-138 495.7 1363 34.0
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 3.7e-137 493.8 1355 34.2
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 1.6e-135 488.4 1357 33.1
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 3.5e-127 460.7 1363 34.6
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 2.1e-124 451.4 1346 33.1
PGSC0003DMG400011484 Solanum tuberosum HOM05D000283 ORTHO05D006673 8.3e-121 439.5 874 41.8
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 1.1e-120 439.1 1350 32.6
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 9.1e-120 436.0 1401 32.1
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 5.9e-119 433.3 1176 36.0
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 2.9e-118 431.0 1233 33.4
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 5.2e-115 420.2 1190 34.5
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 1.3e-113 415.6 1231 32.6
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 1.7e-113 415.2 1323 32.3
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 2.9e-110 404.4 1314 31.3
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 1.6e-108 398.7 1374 31.4
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 8.0e-108 396.4 1278 31.5
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.9e-101 375.2 1316 32.9
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 1.6e-100 372.1 1418 30.4
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 2.1e-100 371.7 1299 30.4
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 2.1e-100 371.7 1384 29.8
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 3.6e-100 370.9 1216 33.1
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 4.7e-100 370.5 1289 30.6
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 2.0e-98 365.2 1428 29.8
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 2.6e-98 364.8 1372 31.5
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 5.8e-98 363.6 1316 32.4
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 1.3e-97 362.5 1264 32.1
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.3e-97 362.5 525 48.0
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 6.4e-97 360.1 1301 30.5
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 8.3e-97 359.8 1402 30.7
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 5.4e-96 357.1 1395 30.0
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 7.0e-96 356.7 1411 30.2
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 1.3e-94 352.4 1374 30.9
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 5.0e-94 350.5 1433 29.7
Sopen04g005350 Solanum pennellii HOM05D000283 ORTHO05D006673 1.5e-93 349.0 841 37.8
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 5.6e-93 347.1 1367 30.0
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 2.3e-91 341.7 1375 29.5
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 3.1e-91 341.3 1132 32.4
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 1.9e-88 332.0 1319 28.7
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 3.0e-86 324.7 1400 29.1
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 3.9e-86 324.3 1198 29.8
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 8.6e-86 323.2 1366 29.9
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 4.7e-84 317.4 1403 28.7
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 2.0e-82 312.0 1345 28.8
Solyc04g010180.4 Solanum lycopersicum HOM05D000283 ORTHO05D006673 4.9e-81 307.4 167 96.4
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 8.4e-81 306.6 1417 29.2
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 7.1e-80 303.5 1372 28.8
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 1.2e-79 302.8 1372 30.1
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 6.0e-79 300.4 1219 29.4
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 6.0e-79 300.4 1376 29.0
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 7.8e-79 300.1 1358 29.0
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 1.3e-78 299.3 1377 29.2
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 8.7e-78 296.6 1381 28.7
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 3.3e-77 294.7 1366 28.9
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 4.0e-75 287.7 1367 28.3
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 3.4e-74 284.6 484 40.7
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 5.8e-74 283.9 862 33.9
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 2.9e-73 281.6 1068 30.1
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 6.4e-73 280.4 728 34.6
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 3.2e-72 278.1 919 32.2
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 9.3e-72 276.6 1264 27.8
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 6.2e-68 263.8 656 36.1
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 1.1e-67 263.1 1390 28.0
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 6.9e-67 260.4 274 51.5
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 1.7e-57 229.2 1426 26.5
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 8.2e-52 210.3 1142 28.3
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 5.3e-51 207.6 328 46.6
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 1.1e-48 199.9 765 31.9
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 3.2e-48 198.4 1100 28.1
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 2.7e-47 195.3 1267 26.0
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 3.3e-45 188.3 1106 28.5
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 9.7e-45 186.8 142 71.1
Sopen04g005300 Solanum pennellii HOM05D000283 ORTHO05D006673 6.9e-43 180.6 811 29.0
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 1.5e-42 179.5 1386 25.1
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 1.1e-40 173.3 698 30.8
PGSC0003DMG400039757 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.4e-38 166.4 168 60.7
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 1.8e-38 166.0 1283 26.2
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 1.9e-37 162.5 904 30.0
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 2.5e-32 145.6 1315 24.8
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 2.3e-30 139.0 743 27.5
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 5.1e-30 137.9 1405 24.8
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 6.7e-30 137.5 1133 24.9
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 1.7e-28 132.9 1307 24.9
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 4.8e-28 131.3 666 28.2
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 1.8e-27 129.4 781 26.2
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.0e-25 123.6 115 60.9
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 5.0e-25 121.3 1231 24.9
Sopen04g005290 Solanum pennellii HOM05D000312 ORTHO05D000221 4.2e-24 118.2 688 29.1
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 9.4e-24 117.1 372 33.3
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 3.6e-23 115.2 1293 24.5
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 4.7e-23 114.8 1354 24.7
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 2.3e-22 112.5 663 27.9
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 2.8e-20 105.5 1287 24.5
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 7.0e-19 100.9 435 29.2
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 3.5e-18 98.6 663 25.6
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 4.5e-18 98.2 423 29.6
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 7.7e-18 97.4 739 24.9
SGA_v2.0_scaffold44G16695 Striga asiatica HOM05D000283 ORTHO05D006673 5.0e-17 94.7 448 27.2
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 8.5e-17 94.0 660 26.4
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 8.5e-17 94.0 1297 24.1
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 8.5e-17 94.0 303 31.4
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 1.5e-16 93.2 1007 24.4
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 4.2e-16 91.7 306 31.0
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.6e-15 89.7 286 35.3
Sopen04g005280 Solanum pennellii HOM05D000283 ORTHO05D006673 6.1e-15 87.8 93 58.1
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 8.0e-15 87.4 675 24.4
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.0e-14 87.0 295 32.5
PGSC0003DMG400011490 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.4e-14 86.7 147 46.9
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 1.8e-14 86.3 1029 24.9
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 1.8e-14 86.3 268 35.8
Oeu025164.1 Olea europaea HOM05D000283 ORTHO05D010811 1.5e-13 83.2 327 31.5
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 2.0e-13 82.8 1004 23.9
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 5.7e-13 81.3 197 37.1
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 9.7e-13 80.5 1260 24.2
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 6.3e-12 77.8 201 36.8
Oeu025165.1 Olea europaea HOM05D008194 ORTHO05D010811 7.0e-11 74.3 323 30.3
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 9.1e-11 73.9 1253 24.0
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 3.5e-10 72.0 336 31.2
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 4.5e-10 71.6 279 33.0
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 7.7e-10 70.9 165 32.1
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 5.5e-08 64.7 1188 24.0


User provided reference genes

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