Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g005200 Solanum pennellii HOM05D007620 ORTHO05D009568 5.4e-44 183.0 210 100.0
Nitab4.5_0006737g0010 Nicotiana tabacum HOM05D007620 ORTHO05D009568 5.8e-22 109.8 117 89.7
Nitab4.5_0003780g0130 Nicotiana tabacum HOM05D007620 ORTHO05D009568 8.4e-21 105.9 117 88.9
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 1.0e-18 99.0 45 100.0
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 5.1e-18 96.7 210 80.5
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 7.1e-12 76.3 43 76.7
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 1.2e-11 75.5 43 72.1
Thhalv10022408m.g Eutrema salsugineum HOM05D007620 ORTHO05D009568 2.7e-11 74.3 43 69.8
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 3.5e-11 73.9 43 67.4
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 4.6e-11 73.6 43 72.1
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 4.6e-11 73.6 43 69.8
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 4.6e-11 73.6 43 69.8
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 4.6e-11 73.6 43 74.4
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 6.0e-11 73.2 43 67.4
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 6.0e-11 73.2 43 67.4
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 6.0e-11 73.2 43 67.4
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 6.0e-11 73.2 45 66.7
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 6.0e-11 73.2 43 67.4
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.0e-10 72.4 43 69.8
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.0e-10 72.4 43 69.8
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.0e-10 72.4 43 69.8
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 1.0e-10 72.4 42 76.2
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 1.0e-10 72.4 43 74.4
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 1.3e-10 72.0 43 67.4
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 1.7e-10 71.6 43 65.1
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 3.0e-10 70.9 43 69.8
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 3.0e-10 70.9 43 67.4
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 3.9e-10 70.5 43 67.4
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 3.9e-10 70.5 43 67.4
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 3.9e-10 70.5 45 68.9
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 5.1e-10 70.1 43 72.1
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 6.6e-10 69.7 41 85.4
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 6.6e-10 69.7 43 65.1
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 1.1e-09 68.9 43 65.1
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 1.1e-09 68.9 45 62.2
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 1.1e-09 68.9 43 65.1
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 1.5e-09 68.6 43 67.4
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 3.3e-09 67.4 43 62.8
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 4.3e-09 67.0 43 62.8
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 1.3e-08 65.5 45 55.6
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 1.3e-08 65.5 45 60.0
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 1.6e-08 65.1 45 60.0
SalBow6G2000 Salvia bowleyana HOM05D007620 ORTHO05D009568 2.1e-08 64.7 43 62.8
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 3.6e-08 63.9 43 58.1
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 3.6e-08 63.9 43 60.5
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 3.6e-08 63.9 45 60.0
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 3.6e-08 63.9 43 60.5
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 4.8e-08 63.5 43 58.1
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 6.2e-08 63.2 45 62.2
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 8.1e-08 62.8 43 55.8
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 8.1e-08 62.8 43 55.8
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 8.1e-08 62.8 43 60.5
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 8.1e-08 62.8 43 60.5
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 2.4e-07 61.2 42 59.5
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 9.0e-07 59.3 42 59.5
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 3.4e-06 57.4 38 57.9
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 5.8e-06 56.6 43 55.8


User provided reference genes

Program Settings