Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 1.1e-156 556.6 295 100.0
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 1.4e-154 549.7 295 99.0
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 1.1e-138 496.9 295 89.5
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 2.5e-127 459.1 295 82.7
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 9.4e-127 457.2 274 86.5
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 2.2e-123 446.0 239 98.3
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 1.7e-115 419.9 274 79.9
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 6.4e-107 391.3 281 70.1
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 6.0e-105 384.8 276 68.8
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 8.6e-104 380.9 277 68.6
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 1.1e-103 380.6 295 67.5
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 1.8e-101 373.2 295 64.7
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 5.2e-101 371.7 257 71.6
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 8.9e-101 370.9 297 67.0
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 2.0e-100 369.8 296 66.2
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 7.5e-100 367.9 285 65.6
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 2.9e-99 365.9 276 66.3
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.4e-98 363.6 253 70.4
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 1.9e-98 363.2 256 70.3
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 2.4e-98 362.8 299 62.9
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 1.2e-97 360.5 275 65.5
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 1.6e-97 360.1 283 65.0
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.9e-95 353.2 299 62.2
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 1.9e-95 353.2 223 78.0
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 2.5e-95 352.8 243 70.4
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 3.3e-95 352.4 243 70.8
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 3.3e-95 352.4 261 65.9
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 4.3e-95 352.1 245 70.2
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 4.3e-95 352.1 223 78.0
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 5.6e-95 351.7 255 69.4
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 1.2e-94 350.5 262 65.3
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 1.2e-94 350.5 264 66.3
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 1.2e-94 350.5 261 67.0
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 1.2e-94 350.5 243 70.4
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 2.1e-94 349.7 222 76.1
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 4.7e-94 348.6 274 65.0
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 1.1e-93 347.4 278 63.7
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 1.4e-93 347.1 296 60.8
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 1.4e-93 347.1 252 68.3
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 1.8e-93 346.7 268 63.8
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 2.3e-93 346.3 279 64.5
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 2.3e-93 346.3 256 67.2
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 3.1e-93 345.9 264 65.2
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 1.2e-92 344.0 279 63.8
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 1.5e-92 343.6 265 65.7
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 2.0e-92 343.2 253 65.6
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 2.0e-92 343.2 252 66.7
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 5.8e-92 341.7 254 66.5
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 7.5e-92 341.3 279 63.4
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 2.2e-91 339.7 284 60.9
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 2.9e-91 339.3 244 69.3
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 6.4e-91 338.2 253 64.8
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 6.4e-91 338.2 285 63.9
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 8.3e-91 337.8 243 67.5
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 1.1e-90 337.4 246 65.9
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 1.4e-90 337.0 279 62.0
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 4.1e-90 335.5 266 62.4
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 7.1e-90 334.7 283 59.4
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 4.6e-89 332.0 243 65.8
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 7.8e-89 331.3 243 65.8
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 1.3e-88 330.5 222 71.2
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 2.3e-88 329.7 222 71.2
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.0e-88 329.3 243 65.8
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 3.0e-88 329.3 277 60.3
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 8.6e-88 327.8 227 70.9
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.8e-86 322.8 242 65.3
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 2.8e-86 322.8 268 61.9
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 6.2e-86 321.6 211 72.5
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.1e-85 319.3 242 64.9
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 5.2e-85 318.5 222 69.8
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 1.2e-84 317.4 222 68.9
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 1.5e-84 317.0 222 69.4
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 2.6e-84 316.2 222 68.5
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 3.4e-84 315.8 222 68.5
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 4.4e-84 315.5 222 68.0
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 4.4e-84 315.5 222 68.0
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 4.4e-84 315.5 222 68.0
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 9.9e-84 314.3 222 68.5
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 1.7e-83 313.5 270 57.4
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 2.2e-83 313.2 222 68.9
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 4.9e-83 312.0 222 67.1
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 8.4e-83 311.2 222 68.5
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 4.2e-82 308.9 202 72.3
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 7.1e-82 308.1 222 68.9
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 7.1e-82 308.1 272 56.2
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.7e-80 303.5 222 66.7
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 7.3e-79 298.1 229 63.3
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 8.1e-78 294.7 222 66.7
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 1.4e-77 293.9 201 70.6
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.5e-76 290.4 252 59.9
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 1.5e-76 290.4 201 67.7
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 9.9e-76 287.7 183 74.9
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 2.2e-75 286.6 297 54.5
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 3.8e-75 285.8 243 56.0
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 5.4e-74 282.0 240 60.0
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 2.5e-71 273.1 206 66.0
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 4.3e-71 272.3 267 55.4
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 5.6e-71 271.9 173 76.9
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 4.8e-70 268.9 222 56.8
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 8.1e-70 268.1 201 66.2
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 5.3e-69 265.4 175 73.7
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 5.3e-69 265.4 222 57.2
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 9.0e-69 264.6 285 53.3
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 2.6e-68 263.1 271 54.6
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.9e-67 259.6 222 56.8
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 1.4e-66 257.3 223 56.5
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 1.3e-64 250.8 222 53.6
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 2.1e-62 243.4 221 53.8
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 1.1e-58 231.1 233 50.6
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 1.8e-56 223.8 164 62.2
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 9.6e-55 218.0 263 45.6
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 1.3e-54 217.6 177 57.6
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.6e-52 209.9 138 71.0
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 4.3e-47 192.6 232 49.6
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 3.4e-44 183.0 112 77.7
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.1e-42 177.9 172 54.7
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 5.5e-42 175.6 146 59.6
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 6.9e-37 158.7 226 40.3
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 2.9e-35 153.3 130 61.5
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 7.7e-28 128.6 99 57.6
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 1.5e-26 124.4 82 76.8
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 4.2e-26 122.9 133 48.1
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 3.9e-24 116.3 177 35.6
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 9.7e-23 111.7 81 60.5
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 1.7e-22 110.9 81 59.3
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 8.2e-22 108.6 81 59.3
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 1.3e-19 101.3 82 58.5
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 9.4e-18 95.1 196 32.7
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 2.1e-17 94.0 165 35.8
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 2.6e-15 87.0 80 56.2
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 3.5e-12 76.6 54 68.5
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 8.5e-11 72.0 52 69.2
MCO09G447 Micromonas commoda HOM05D005617 ORTHO05D006847 8.5e-11 72.0 228 31.1
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 7.2e-10 68.9 76 48.7
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 4.7e-09 66.2 173 30.1
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 6.1e-09 65.9 60 53.3
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 2.8e-06 57.0 59 47.5
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.8e-06 57.0 59 47.5
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.8e-06 57.0 59 47.5
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.8e-06 57.0 59 47.5
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 6.3e-06 55.8 59 45.8
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 8.3e-06 55.5 86 34.9


User provided reference genes

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