Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g004980 Solanum pennellii HOM05D006721 ORTHO05D000476 7.0e-57 223.8 118 100.0
PGSC0003DMG400025428 Solanum tuberosum HOM05D006721 ORTHO05D000476 6.6e-55 217.2 116 97.4
CAN.G186.72 Capsicum annuum HOM05D006721 ORTHO05D000476 9.2e-49 196.8 117 88.9
Peaxi162Scf00135g00914 Petunia axillaris HOM05D006721 ORTHO05D000476 1.1e-41 173.3 110 82.7
Nitab4.5_0000930g0080 Nicotiana tabacum HOM05D006721 ORTHO05D000476 1.2e-40 169.9 109 82.6
Nitab4.5_0002651g0060 Nicotiana tabacum HOM05D006721 ORTHO05D000476 3.6e-37 158.3 125 72.0
HanXRQChr11g0322821 Helianthus annuus HOM05D006721 ORTHO05D000476 1.1e-36 156.8 102 78.4
Dinv14631 Davidia involucrata HOM05D006721 ORTHO05D000476 2.0e-35 152.5 109 69.7
Ciclev10022930m.g Citrus clementina HOM05D006721 ORTHO05D000476 1.3e-34 149.8 107 73.8
Haze_04466 Corylus avellana HOM05D006721 ORTHO05D000476 1.3e-34 149.8 108 75.9
Actinidia38949 Actinidia chinensis HOM05D006721 ORTHO05D000476 1.7e-34 149.4 111 68.5
QL01p041965 Quercus lobata HOM05D006721 ORTHO05D000476 3.8e-34 148.3 109 74.3
Potri.019G014100 Populus trichocarpa HOM05D006721 ORTHO05D000476 8.4e-34 147.1 108 75.9
SGA_v2.0_scaffold90G27702 Striga asiatica HOM05D006721 ORTHO05D000476 8.4e-34 147.1 97 74.2
Manes.09G149900 Manihot esculenta HOM05D006721 ORTHO05D000476 1.9e-33 146.0 110 71.8
Oeu058331.1 Olea europaea HOM05D006721 ORTHO05D000476 1.9e-33 146.0 101 72.3
QL03p032184 Quercus lobata HOM05D006721 ORTHO05D000476 2.4e-33 145.6 109 73.4
QL03p032281 Quercus lobata HOM05D006721 ORTHO05D000476 2.4e-33 145.6 109 73.4
Dinv18276 Davidia involucrata HOM05D006721 ORTHO05D000476 5.4e-33 144.4 100 72.0
Lsat_1_v5_gn_2_107641 Lactuca sativa HOM05D006721 ORTHO05D000476 5.4e-33 144.4 100 74.0
Nn1g02669 Nelumbo nucifera HOM05D006721 ORTHO05D000476 5.4e-33 144.4 108 68.5
Prupe.6G347400 Prunus persica HOM05D006721 ORTHO05D000476 7.1e-33 144.1 108 74.1
THA.LOC104808031 Tarenaya hassleriana HOM05D006721 ORTHO05D000476 7.1e-33 144.1 107 71.0
Atru.chr2.886 Acer truncatum HOM05D006721 ORTHO05D000476 9.2e-33 143.7 109 70.6
Carub.0003s2825 Capsella rubella HOM05D006721 ORTHO05D000476 9.2e-33 143.7 111 67.6
Cc02_g09090 Coffea canephora HOM05D006721 ORTHO05D000476 9.2e-33 143.7 107 66.4
GSVIVG01036217001 Vitis vinifera HOM05D006721 ORTHO05D000476 9.2e-33 143.7 101 71.3
RcHm_v2.0_Chr3g0450141 Rosa chinensis HOM05D006721 ORTHO05D000476 1.2e-32 143.3 97 79.4
Cpa.g.sc162.11 Carica papaya HOM05D006721 ORTHO05D000476 1.6e-32 142.9 103 71.8
Sabra19G0016300 Salix brachista HOM05D006721 ORTHO05D000476 1.6e-32 142.9 97 77.3
Sabra19G0026800 Salix brachista HOM05D006721 ORTHO05D000476 1.6e-32 142.9 97 77.3
CiPaw.07G077700 Carya illinoinensis HOM05D006721 ORTHO05D000476 2.1e-32 142.5 87 82.8
ECA238G3797 Erigeron canadensis HOM05D006721 ORTHO05D000476 2.7e-32 142.1 101 71.3
TAR365G0041 Trochodendron aralioides HOM05D006721 ORTHO05D000476 2.7e-32 142.1 110 70.0
CSS0047325 Camellia sinensis var. sinensis HOM05D006721 ORTHO05D000476 3.5e-32 141.7 100 73.0
Actinidia34741 Actinidia chinensis HOM05D006721 ORTHO05D000476 4.6e-32 141.4 109 67.9
Aqoxy2G03596 Aquilegia oxysepala HOM05D006721 ORTHO05D000476 4.6e-32 141.4 110 70.9
vmacro10349 Vaccinium macrocarpon HOM05D006721 ORTHO05D000476 4.6e-32 141.4 101 71.3
HPP92_000759 Vanilla planifolia HOM05D006721 ORTHO05D000476 4.6e-32 141.4 113 66.4
Migut.F00814 Erythranthe guttata HOM05D006721 ORTHO05D000476 7.8e-32 140.6 98 72.4
MSTRG.9005 Avicennia marina HOM05D006721 ORTHO05D000476 1.0e-31 140.2 96 72.9
Thhalv10023143m.g Eutrema salsugineum HOM05D006721 ORTHO05D000476 1.7e-31 139.4 110 66.4
PGR142G1199 Punica granatum HOM05D006721 ORTHO05D000476 1.7e-31 139.4 100 71.0
EL10Ac4g09049 Beta vulgaris HOM05D006721 ORTHO05D000476 3.0e-31 138.7 106 66.0
Cfa006323 Carpinus fangiana HOM05D006721 ORTHO05D000476 3.0e-31 138.7 82 86.6
COL.COLO4_15417 Corchorus olitorius HOM05D006721 ORTHO05D000476 3.0e-31 138.7 112 67.9
Ah.04g163750 Amaranthus hybridus HOM05D006721 ORTHO05D000476 5.1e-31 137.9 117 65.0
FvH4_6g02371 Fragaria vesca HOM05D006721 ORTHO05D000476 5.1e-31 137.9 97 76.3
FAN02G4370 Fragaria x ananassa HOM05D006721 ORTHO05D000476 5.1e-31 137.9 97 76.3
FAN05G3615 Fragaria x ananassa HOM05D004756 ORTHO05D005793 5.1e-31 137.9 97 76.3
FAN05G5208 Fragaria x ananassa HOM05D006721 ORTHO05D000476 5.1e-31 137.9 97 76.3
FAN14G0694 Fragaria x ananassa HOM05D004756 ORTHO05D005793 5.1e-31 137.9 97 76.3
FAN14G4094 Fragaria x ananassa HOM05D004756 ORTHO05D005793 5.1e-31 137.9 97 76.3
TWI56G0396 Tripterygium wilfordii HOM05D006721 ORTHO05D000476 5.1e-31 137.9 98 72.4
Gohir.A13G168900 Gossypium hirsutum HOM05D006721 ORTHO05D000476 6.6e-31 137.5 109 67.0
Gohir.D13G174300 Gossypium hirsutum HOM05D006721 ORTHO05D000476 6.6e-31 137.5 109 67.0
Gorai.013G186500 Gossypium raimondii HOM05D006721 ORTHO05D000476 6.6e-31 137.5 109 67.0
Aa31LG8G12480 Aethionema arabicum HOM05D006721 ORTHO05D000476 8.6e-31 137.1 115 64.3
Phvul.006G106600 Phaseolus vulgaris HOM05D006721 ORTHO05D000476 8.6e-31 137.1 96 74.0
Sp3g27300 Schrenkiella parvula HOM05D006721 ORTHO05D000476 8.6e-31 137.1 114 65.8
Eucgr.B02129 Eucalyptus grandis HOM05D006721 ORTHO05D000476 1.1e-30 136.7 112 66.1
CsaV3_2G003760 Cucumis sativus L. HOM05D006721 ORTHO05D000476 2.5e-30 135.6 114 64.0
Glyma.03G251900 Glycine max HOM05D006721 ORTHO05D000476 2.5e-30 135.6 96 71.9
Hund06940 Selenicereus undatus HOM05D006721 ORTHO05D000476 2.5e-30 135.6 101 66.3
Thecc.05G276800 Theobroma cacao HOM05D006721 ORTHO05D000476 3.3e-30 135.2 100 73.0
Lj1g0023872 Lotus japonicus HOM05D006721 ORTHO05D000476 4.3e-30 134.8 103 69.9
A03p45120 Brassica napus HOM05D006721 ORTHO05D000476 5.6e-30 134.4 108 68.5
BraA03t13647Z Brassica rapa HOM05D006721 ORTHO05D000476 5.6e-30 134.4 108 68.5
CANSAT54G3036 Cannabis sativa HOM05D006721 ORTHO05D000476 5.6e-30 134.4 110 66.4
AUR62001066 Chenopodium quinoa HOM05D006721 ORTHO05D000476 5.6e-30 134.4 114 63.2
Gorai.008G193300 Gossypium raimondii HOM05D006721 ORTHO05D000476 5.6e-30 134.4 109 66.1
CARHR104660 Cardamine hirsuta HOM05D006721 ORTHO05D000476 7.3e-30 134.0 100 69.0
MD12G1244800 Malus domestica HOM05D006721 ORTHO05D000476 7.3e-30 134.0 108 70.4
PSO210G7245 Papaver somniferum HOM05D006721 ORTHO05D000476 7.3e-30 134.0 95 75.8
PSO832G0589 Papaver somniferum HOM05D006721 ORTHO05D000476 7.3e-30 134.0 95 75.8
Os07g0185800 Oryza sativa ssp. japonica HOM05D006721 ORTHO05D000476 9.6e-30 133.7 91 71.4
Gohir.D12G180151 Gossypium hirsutum HOM05D006721 ORTHO05D000476 1.2e-29 133.3 109 67.0
Lalb_Chr04g0262001 Lupinus albus HOM05D006721 ORTHO05D000476 1.2e-29 133.3 112 65.2
MBI19_g37090_MAGBIO Magnolia biondii HOM05D006721 ORTHO05D000476 1.2e-29 133.3 110 64.5
AT2G14045 Arabidopsis thaliana HOM05D006721 ORTHO05D000476 2.8e-29 132.1 100 69.0
CDE06G1546 Ceratophyllum demersum HOM05D006721 ORTHO05D000476 2.8e-29 132.1 91 73.6
BcaC01g03109 Brassica carinata HOM05D006721 ORTHO05D000476 4.7e-29 131.3 102 70.6
C03p55970 Brassica napus HOM05D006721 ORTHO05D000476 4.7e-29 131.3 102 70.6
BolC3t17881H Brassica oleracea HOM05D006721 ORTHO05D000476 4.7e-29 131.3 102 70.6
Sed0018278 Sechium edule HOM05D006721 ORTHO05D000476 6.2e-29 131.0 113 62.8
Psat3g006080 Pisum sativum HOM05D006721 ORTHO05D000476 8.1e-29 130.6 103 66.0
TPR.G6950 Trifolium pratense HOM05D006721 ORTHO05D000476 1.1e-28 130.2 102 67.6
Zm00001eb301780 Zea mays HOM05D006721 ORTHO05D000476 1.1e-28 130.2 97 67.0
AUR62004887 Chenopodium quinoa HOM05D006721 ORTHO05D000476 1.4e-28 129.8 114 61.4
Medtr7g116300 Medicago truncatula HOM05D006721 ORTHO05D000476 1.8e-28 129.4 110 62.7
ATR0665G282 Amborella trichopoda HOM05D006721 ORTHO05D000476 3.1e-28 128.6 87 72.4
Sc15g0002500 Simmondsia chinensis HOM05D006721 ORTHO05D000476 6.9e-28 127.5 83 77.1
AL3G45710 Arabidopsis lyrata HOM05D006721 ORTHO05D000476 2.2e-26 122.5 111 61.3
GSVIVG01014622001 Vitis vinifera HOM05D006721 ORTHO05D000476 2.9e-26 122.1 81 74.1
Ca_09468_v3 Cicer arietinum L. HOM05D006721 ORTHO05D000476 1.1e-25 120.2 93 69.9
GSVIVG01015127001 Vitis vinifera HOM05D006721 ORTHO05D000476 1.1e-25 120.2 82 74.4
Duzib128G0372 Durio zibethinus HOM05D006721 ORTHO05D000476 2.5e-22 109.0 109 58.7
DCAR_030975 Daucus carota HOM05D006889 ORTHO05D008614 2.8e-21 105.5 101 55.4
SMO367G0192 Selaginella moellendorffii HOM05D001348 ORTHO05D002788 6.2e-21 104.4 85 62.4
Pp3c7_11510 Physcomitrium patens HOM05D006721 ORTHO05D000476 1.4e-20 103.2 100 49.0
Mapoly0013s0055 Marchantia polymorpha HOM05D006721 ORTHO05D000476 3.1e-20 102.1 87 58.6
BraA10t43135Z Brassica rapa HOM05D006721 ORTHO05D000476 1.7e-18 96.3 83 62.7
BraA09t38027Z Brassica rapa HOM05D006721 ORTHO05D000476 2.2e-18 95.9 82 63.4
A07p07050 Brassica napus HOM05D006721 ORTHO05D000476 2.9e-18 95.5 77 66.2
BraA06t26268Z Brassica rapa HOM05D006721 ORTHO05D000476 2.9e-18 95.5 84 64.3
MELO3C004419.2 Cucumis melo HOM05D006721 ORTHO05D000476 2.4e-17 92.4 77 59.7
arahy.Tifrunner.gnm1.ann1.DA1MAK Arachis hypogaea HOM05D006721 ORTHO05D000476 1.5e-14 83.2 72 59.7
arahy.Tifrunner.gnm1.ann1.P0L55B Arachis hypogaea HOM05D006721 ORTHO05D000476 1.5e-14 83.2 72 59.7
CBR_g51472 Chara braunii HOM05D006721 ORTHO05D000476 2.5e-14 82.4 88 46.6
A09p24350 Brassica napus HOM05D006721 ORTHO05D000476 9.6e-14 80.5 58 70.7
C07p11900 Brassica napus HOM05D006721 ORTHO05D000476 1.6e-13 79.7 75 64.0
ClCG02G016980 Citrullus lanatus HOM05D006721 ORTHO05D000476 3.7e-13 78.6 55 65.5
MCO10G233 Micromonas commoda HOM05D006721 ORTHO05D000476 3.7e-13 78.6 80 51.2
A01p30750 Brassica napus HOM05D001035 ORTHO05D000476 4.8e-13 78.2 58 69.0
BcaB06g29605 Brassica carinata HOM05D001035 ORTHO05D021752 1.4e-12 76.6 58 65.5
Rhsim09G0138600 Rhododendron simsii HOM05D006721 ORTHO05D000476 2.4e-12 75.9 47 78.7
FAN09G4219 Fragaria x ananassa HOM05D006721 ORTHO05D000476 3.1e-12 75.5 81 53.1
Cre02.g105950 Chlamydomonas reinhardtii HOM05D006721 ORTHO05D000476 6.9e-12 74.3 90 47.8
BolC7t41661H Brassica oleracea HOM05D006721 ORTHO05D000476 1.2e-11 73.6 75 61.3
PRCOL_00003504 Prasinoderma coloniale HOM05D006721 ORTHO05D000476 3.4e-11 72.0 64 53.1
Zm00001eb112450 Zea mays HOM05D006721 ORTHO05D000476 1.3e-10 70.1 51 62.7
A05p09770 Brassica napus HOM05D006721 ORTHO05D000476 1.9e-09 66.2 55 63.6
DCAR_030976 Daucus carota HOM05D006721 ORTHO05D000476 1.2e-08 63.5 54 57.4
SHI31376 Sapria himalayana HOM05D006721 ORTHO05D000476 1.1e-06 57.0 46 56.5
A09p05680 Brassica napus HOM05D006721 ORTHO05D000476 9.6e-06 53.9 28 89.3


User provided reference genes

Program Settings