Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g004820 Solanum pennellii HOM05D007039 ORTHO05D008886 3.5e-146 521.5 256 100.0
Solyc04g009700.3 Solanum lycopersicum HOM05D007039 ORTHO05D008886 1.1e-144 516.5 256 98.4
PGSC0003DMG400016998 Solanum tuberosum HOM05D007039 ORTHO05D008886 3.3e-144 515.0 256 98.4
CAN.G186.55 Capsicum annuum HOM05D007039 ORTHO05D008886 4.1e-134 481.5 256 91.8
Peaxi162Scf00195g01020 Petunia axillaris HOM05D007039 ORTHO05D008886 3.4e-117 425.2 259 81.5
Oeu025598.1 Olea europaea HOM05D007039 ORTHO05D008886 1.9e-115 419.5 251 81.7
Nitab4.5_0003927g0060 Nicotiana tabacum HOM05D007039 ORTHO05D008886 1.6e-114 416.4 248 83.9
Rhsim09G0142000 Rhododendron simsii HOM05D007039 ORTHO05D008886 1.0e-113 413.7 259 77.2
CiPaw.14G032800 Carya illinoinensis HOM05D007039 ORTHO05D008886 6.3e-111 404.4 259 73.7
Cc02_g09650 Coffea canephora HOM05D007039 ORTHO05D008886 2.4e-110 402.5 260 75.0
Dinv11837 Davidia involucrata HOM05D007039 ORTHO05D008886 2.4e-110 402.5 258 75.6
Oeu036842.1 Olea europaea HOM05D007039 ORTHO05D008886 1.6e-109 399.8 239 80.8
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 2.2e-108 396.0 256 72.7
HanXRQChr08g0217501 Helianthus annuus HOM05D007039 ORTHO05D008886 5.0e-108 394.8 245 74.7
TWI63G1767 Tripterygium wilfordii HOM05D007039 ORTHO05D008886 5.0e-108 394.8 258 74.0
CANSAT56G1368 Cannabis sativa HOM05D007039 ORTHO05D008886 1.1e-107 393.7 238 77.7
CSS0047124 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 3.2e-107 392.1 242 75.6
SalBow6G1307 Salvia bowleyana HOM05D007039 ORTHO05D008886 1.2e-106 390.2 240 76.7
Prupe.2G067300 Prunus persica HOM05D007039 ORTHO05D008886 8.0e-106 387.5 237 77.6
SGA_v2.0_scaffold62G21336 Striga asiatica HOM05D007039 ORTHO05D008886 1.8e-105 386.3 260 71.9
GSVIVG01001001001 Vitis vinifera HOM05D007039 ORTHO05D008886 6.7e-105 384.4 259 71.4
vmacro10308 Vaccinium macrocarpon HOM05D007039 ORTHO05D008886 1.2e-104 383.6 302 65.2
Lj2A32T31 Lonicera japonica HOM05D007039 ORTHO05D008886 3.3e-104 382.1 240 75.4
MD02G1261300 Malus domestica HOM05D007039 ORTHO05D008886 4.4e-104 381.7 240 75.8
arahy.Tifrunner.gnm1.ann1.2NV5LW Arachis hypogaea HOM05D007039 ORTHO05D008886 7.5e-104 380.9 240 75.4
arahy.Tifrunner.gnm1.ann1.XC1RGZ Arachis hypogaea HOM05D007039 ORTHO05D008886 7.5e-104 380.9 240 75.4
Eucgr.J00258 Eucalyptus grandis HOM05D007039 ORTHO05D008886 9.7e-104 380.6 240 73.8
QL04p044873 Quercus lobata HOM05D007039 ORTHO05D008886 9.7e-104 380.6 239 75.7
Ca_25665_v3 Cicer arietinum L. HOM05D007039 ORTHO05D008886 1.3e-103 380.2 240 74.6
CSS0023700 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 1.7e-103 379.8 251 72.5
Migut.F00878 Erythranthe guttata HOM05D007039 ORTHO05D008886 2.2e-103 379.4 240 75.4
PGSC0003DMG400023289 Solanum tuberosum HOM05D007039 ORTHO05D008886 3.7e-103 378.6 183 98.9
Medtr1g112080 Medicago truncatula HOM05D007039 ORTHO05D008886 1.8e-102 376.3 240 73.3
Potri.010G238700 Populus trichocarpa HOM05D007039 ORTHO05D008886 1.8e-102 376.3 258 71.3
Lsat_1_v5_gn_8_24101 Lactuca sativa HOM05D007039 ORTHO05D008886 2.4e-102 375.9 242 72.3
TPR.G2471 Trifolium pratense HOM05D007039 ORTHO05D008886 2.4e-102 375.9 240 72.1
Atru.chr12.1023 Acer truncatum HOM05D007039 ORTHO05D008886 2.0e-101 372.9 259 68.0
Psat6g231000 Pisum sativum HOM05D007039 ORTHO05D008886 7.7e-101 370.9 240 73.3
Manes.07G087400 Manihot esculenta HOM05D007039 ORTHO05D008886 2.9e-100 369.0 241 72.6
Sabra10G0186900 Salix brachista HOM05D007039 ORTHO05D008886 6.5e-100 367.9 258 70.5
Glyma.20G110700 Glycine max HOM05D007039 ORTHO05D008886 1.1e-99 367.1 240 70.8
Lj5g0024269 Lotus japonicus HOM05D007039 ORTHO05D008886 1.9e-99 366.3 237 73.8
Phvul.007G022300 Phaseolus vulgaris HOM05D007039 ORTHO05D008886 1.9e-99 366.3 240 70.0
Lalb_Chr06g0166411 Lupinus albus HOM05D007039 ORTHO05D008886 2.5e-99 365.9 240 72.9
COL.COLO4_17444 Corchorus olitorius HOM05D007039 ORTHO05D008886 9.4e-99 364.0 240 72.1
RcHm_v2.0_Chr1g0331721 Rosa chinensis HOM05D007039 ORTHO05D008886 9.4e-99 364.0 240 72.1
VMungo0720G0617 Vigna mungo HOM05D007039 ORTHO05D008886 2.7e-98 362.5 240 69.6
Ciclev10016452m.g Citrus clementina HOM05D007039 ORTHO05D008886 4.7e-98 361.7 240 70.4
THA.LOC104801579 Tarenaya hassleriana HOM05D007039 ORTHO05D008886 6.1e-98 361.3 240 69.6
MD07G1059500 Malus domestica HOM05D007039 ORTHO05D008886 1.4e-97 360.1 240 72.5
AUR62041513 Chenopodium quinoa HOM05D007039 ORTHO05D008886 2.3e-97 359.4 255 68.2
Thecc.07G140700 Theobroma cacao HOM05D007039 ORTHO05D008886 3.0e-97 359.0 240 68.3
Potri.008G020500 Populus trichocarpa HOM05D007039 ORTHO05D008886 6.8e-97 357.8 258 66.7
Hund22275 Selenicereus undatus HOM05D007039 ORTHO05D008886 8.8e-97 357.5 252 70.2
TAR623G0720 Trochodendron aralioides HOM05D007039 ORTHO05D008886 2.6e-96 355.9 254 67.7
FAN06G3803 Fragaria x ananassa HOM05D007039 ORTHO05D008886 3.4e-96 355.5 240 70.0
FAN01G2006 Fragaria x ananassa HOM05D007039 ORTHO05D008886 7.5e-96 354.4 255 67.5
FAN03G1588 Fragaria x ananassa HOM05D007039 ORTHO05D008886 8.3e-95 350.9 255 66.7
Nn6g34917 Nelumbo nucifera HOM05D007039 ORTHO05D008886 4.1e-94 348.6 255 66.7
AUR62042080 Chenopodium quinoa HOM05D007039 ORTHO05D008886 7.0e-94 347.8 243 68.7
Aqoxy2G01207 Aquilegia oxysepala HOM05D007039 ORTHO05D008886 2.0e-93 346.3 254 65.4
Sc20g0001160 Simmondsia chinensis HOM05D007039 ORTHO05D008886 2.7e-93 345.9 242 68.6
unitig_748.g8774 Utricularia gibba HOM05D007039 ORTHO05D008886 2.7e-93 345.9 252 67.5
FAN10G1571 Fragaria x ananassa HOM05D007039 ORTHO05D008886 5.9e-93 344.7 269 63.6
EL10Ac4g08687 Beta vulgaris HOM05D007039 ORTHO05D008886 7.7e-93 344.4 255 67.5
MELO3C019894.2 Cucumis melo HOM05D007039 ORTHO05D008886 2.3e-92 342.8 240 68.3
Gohir.A06G173100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 2.3e-92 342.8 256 64.1
Sed0014501 Sechium edule HOM05D007039 ORTHO05D008886 2.9e-92 342.4 240 67.5
Gorai.010G214000 Gossypium raimondii HOM05D007039 ORTHO05D008886 5.0e-92 341.7 256 64.1
Gorai.010G214100 Gossypium raimondii HOM05D007039 ORTHO05D008886 5.0e-92 341.7 256 64.1
Duzib106G1061 Durio zibethinus HOM05D007039 ORTHO05D008886 6.6e-92 341.3 239 67.8
Gohir.D06G182700 Gossypium hirsutum HOM05D007039 ORTHO05D008886 6.6e-92 341.3 256 64.1
Gohir.D06G183100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 2.5e-91 339.3 256 64.1
Gohir.D06G183000 Gossypium hirsutum HOM05D007039 ORTHO05D008886 3.3e-91 339.0 256 63.7
Ah.06g186600 Amaranthus hybridus HOM05D007039 ORTHO05D008886 7.2e-91 337.8 260 65.0
Dinv09617 Davidia involucrata HOM05D007039 ORTHO05D008886 9.5e-91 337.4 259 67.2
HPP92_006806 Vanilla planifolia HOM05D007039 ORTHO05D008886 4.7e-90 335.1 235 66.8
ClCG08G008260 Citrullus lanatus HOM05D007039 ORTHO05D008886 3.7e-87 325.5 290 58.3
PSO384G1372 Papaver somniferum HOM05D007039 ORTHO05D008886 9.2e-86 320.9 258 60.9
PSO339G1176 Papaver somniferum HOM05D007039 ORTHO05D008886 3.5e-85 318.9 258 60.5
Zm00001eb366890 Zea mays HOM05D007039 ORTHO05D008886 1.9e-83 313.2 255 58.8
Zm00001eb147230 Zea mays HOM05D007039 ORTHO05D008886 9.5e-83 310.8 255 58.0
Cpa.g.sc56.15 Carica papaya HOM05D007039 ORTHO05D008886 2.1e-82 309.7 194 73.7
TAR633G1803 Trochodendron aralioides HOM05D007039 ORTHO05D008886 1.4e-81 307.0 237 60.3
ECA233G2799 Erigeron canadensis HOM05D007039 ORTHO05D008886 1.8e-81 306.6 189 72.0
Os01g0859400 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 2.0e-80 303.1 256 56.2
Oeu036841.1 Olea europaea HOM05D007039 ORTHO05D008886 3.4e-80 302.4 183 78.7
Glyma.10G279000 Glycine max HOM05D007039 ORTHO05D008886 1.5e-75 287.0 237 60.3
HPP92_009768 Vanilla planifolia HOM05D007039 ORTHO05D008886 7.3e-75 284.6 233 55.8
HPP92_009745 Vanilla planifolia HOM05D007039 ORTHO05D008886 3.6e-74 282.3 233 54.9
MSTRG.9060 Avicennia marina HOM05D007039 ORTHO05D008886 3.1e-73 279.3 183 71.6
Eucgr.J00257 Eucalyptus grandis HOM05D007039 ORTHO05D008886 5.4e-70 268.5 183 68.9
FvH4_7g05130 Fragaria vesca HOM05D007039 ORTHO05D008886 3.3e-67 259.2 183 66.1
Mapoly0010s0050 Marchantia polymorpha HOM05D007039 ORTHO05D008886 4.7e-66 255.4 235 50.6
Os12g0152800 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 4.7e-66 255.4 239 49.4
CsaV3_6G004220 Cucumis sativus L. HOM05D007039 ORTHO05D008886 5.2e-65 251.9 181 64.6
Zm00001eb092690 Zea mays HOM05D007039 ORTHO05D008886 8.9e-65 251.1 238 48.3
PGR142G0235 Punica granatum HOM05D007039 ORTHO05D008886 2.0e-64 250.0 182 65.9
CSS0008887 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 2.6e-64 249.6 188 64.4
AagrBONN_evm.TU.Sc2ySwM_362.1562 Anthoceros agrestis HOM05D007039 ORTHO05D008886 9.5e-59 231.1 238 46.2
CSS0041399 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 1.6e-58 230.3 179 63.1
Pp3c15_5790 Physcomitrium patens HOM05D007039 ORTHO05D008886 4.7e-58 228.8 231 45.9
SMO367G0592 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 6.2e-58 228.4 230 48.3
CBR_g32363 Chara braunii HOM05D007039 ORTHO05D008886 4.0e-57 225.7 205 51.7
AagrBONN_evm.TU.Sc2ySwM_228.3073 Anthoceros agrestis HOM05D007039 ORTHO05D008886 3.8e-55 219.2 216 48.1
CDE08G0883 Ceratophyllum demersum HOM05D007039 ORTHO05D008886 4.0e-49 199.1 158 53.8
Nitab4.5_0000691g0070 Nicotiana tabacum HOM05D007039 ORTHO05D008886 9.9e-48 194.5 248 50.0
DCAR_019005 Daucus carota HOM05D007039 ORTHO05D008886 1.3e-47 194.1 110 75.5
Zm00001eb197030 Zea mays HOM05D007039 ORTHO05D008886 2.8e-42 176.4 180 42.8
SMO353G0277 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 2.3e-36 156.8 182 42.3
Cre01.g018100 Chlamydomonas reinhardtii HOM05D007039 ORTHO05D008886 4.0e-33 146.0 208 36.1
MD04G1248500 Malus domestica HOM05D007039 ORTHO05D008886 3.4e-32 142.9 106 67.9
PRCOL_00002076 Prasinoderma coloniale HOM05D007039 ORTHO05D008886 9.0e-25 118.2 242 27.7


User provided reference genes

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