Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 1.2e-118 429.9 216 100.0
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 1.3e-101 373.2 189 98.9
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.9e-101 372.1 189 98.9
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 5.2e-98 361.3 189 94.2
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 7.7e-94 347.4 198 89.4
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 1.9e-92 342.8 197 88.3
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.5e-92 342.4 198 86.9
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 5.5e-92 341.3 198 88.9
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 7.2e-92 340.9 198 86.4
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 1.8e-90 336.3 198 85.9
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 2.3e-90 335.9 225 79.6
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 8.8e-90 334.0 197 85.8
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 1.2e-89 333.6 197 85.8
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 3.4e-89 332.0 223 78.5
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 2.8e-88 328.9 198 83.8
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 8.3e-88 327.4 198 83.3
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 1.4e-87 326.6 197 82.7
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 2.4e-87 325.9 196 84.2
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 3.1e-87 325.5 196 83.7
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.1e-87 325.5 198 82.3
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 4.1e-87 325.1 198 82.3
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 4.1e-87 325.1 198 82.3
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 4.1e-87 325.1 223 75.8
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 5.4e-87 324.7 198 82.3
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.4e-87 324.7 198 82.3
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 7.0e-87 324.3 198 81.8
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 7.0e-87 324.3 198 82.3
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 9.1e-87 323.9 198 82.8
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 9.1e-87 323.9 201 81.6
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 9.1e-87 323.9 198 82.3
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 2.0e-86 322.8 198 81.8
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 2.0e-86 322.8 198 81.3
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 2.7e-86 322.4 196 83.2
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.9e-86 321.2 197 82.7
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.9e-86 321.2 197 82.7
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 7.7e-86 320.9 198 81.3
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 7.7e-86 320.9 201 81.1
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 1.3e-85 320.1 198 80.8
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 2.2e-85 319.3 201 81.1
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.2e-85 319.3 196 83.7
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 2.9e-85 318.9 196 82.7
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.9e-85 318.9 194 83.5
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 6.5e-85 317.8 196 81.6
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 6.5e-85 317.8 196 81.6
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 6.5e-85 317.8 198 81.8
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 6.5e-85 317.8 196 81.6
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 6.5e-85 317.8 192 81.8
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 1.9e-84 316.2 201 80.6
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 2.5e-84 315.8 198 82.3
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 3.2e-84 315.5 198 80.3
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 3.2e-84 315.5 198 79.8
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 4.2e-84 315.1 197 80.2
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 4.2e-84 315.1 194 83.0
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 4.2e-84 315.1 192 81.2
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 9.4e-84 313.9 198 78.8
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 9.4e-84 313.9 197 79.7
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.2e-83 313.5 198 80.8
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 1.2e-83 313.5 202 79.7
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 3.6e-83 312.0 198 80.8
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 3.6e-83 312.0 198 80.8
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 3.6e-83 312.0 223 72.2
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 6.1e-83 311.2 198 80.8
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 8.0e-83 310.8 198 78.3
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 8.0e-83 310.8 198 80.3
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 1.4e-82 310.1 197 80.7
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 1.8e-82 309.7 197 78.2
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 1.8e-82 309.7 199 78.4
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 2.3e-82 309.3 189 82.5
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 2.3e-82 309.3 198 79.8
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 3.0e-82 308.9 202 79.7
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 5.2e-82 308.1 196 79.6
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 8.8e-82 307.4 196 79.6
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.2e-81 307.0 201 75.6
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 1.5e-81 306.6 198 79.8
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 1.5e-81 306.6 204 77.5
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 3.4e-81 305.4 198 78.8
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 3.4e-81 305.4 201 76.6
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 1.3e-80 303.5 198 78.8
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 1.7e-80 303.1 205 77.1
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.2e-80 302.8 196 77.0
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.2e-80 302.8 201 75.6
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.8e-80 302.4 196 78.6
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 3.7e-80 302.0 198 77.8
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 4.9e-80 301.6 194 78.9
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 6.3e-80 301.2 194 78.4
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 1.1e-79 300.4 198 78.8
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.8e-79 299.7 196 76.5
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 2.4e-79 299.3 196 76.5
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 2.4e-79 299.3 197 78.7
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 3.1e-79 298.9 199 76.9
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 3.1e-79 298.9 222 72.5
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 3.1e-79 298.9 196 78.1
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 4.1e-79 298.5 189 79.9
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 4.1e-79 298.5 196 77.6
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 7.0e-79 297.7 221 71.5
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 9.2e-79 297.4 203 73.9
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 1.2e-78 297.0 193 77.7
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 2.7e-78 295.8 213 72.8
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 4.5e-78 295.0 198 76.8
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 5.9e-78 294.7 189 78.3
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 7.7e-78 294.3 197 78.2
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 1.0e-77 293.9 198 76.3
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 2.3e-77 292.7 195 77.9
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.9e-77 292.4 196 76.0
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 3.8e-77 292.0 260 61.9
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 2.5e-76 289.3 204 73.0
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.2e-75 287.0 203 72.9
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 2.3e-74 282.7 242 64.0
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 6.8e-74 281.2 198 73.7
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 1.5e-73 280.0 214 69.6
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 2.0e-73 279.6 186 75.8
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 5.7e-73 278.1 198 71.7
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.9e-72 275.8 202 72.3
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.4e-71 273.5 189 74.1
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.4e-71 273.5 202 70.3
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 2.4e-71 272.7 203 69.5
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 7.0e-71 271.2 196 73.5
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 9.2e-71 270.8 194 71.1
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 9.2e-71 270.8 198 71.7
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 9.2e-71 270.8 198 71.7
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.2e-70 270.4 202 69.3
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.6e-70 270.0 200 69.5
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 2.0e-70 269.6 195 71.3
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 2.0e-70 269.6 195 71.3
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 4.6e-70 268.5 200 68.5
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 4.6e-70 268.5 200 68.5
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 5.9e-70 268.1 195 70.8
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 7.8e-70 267.7 202 69.3
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 1.0e-69 267.3 199 69.8
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.0e-69 267.3 178 76.4
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.0e-69 267.3 192 72.4
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 3.0e-69 265.8 197 70.6
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 3.9e-69 265.4 202 68.8
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.0e-69 265.0 144 88.9
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 8.6e-69 264.2 177 75.1
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 2.5e-68 262.7 194 70.1
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 2.5e-68 262.7 169 79.3
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 7.3e-68 261.2 160 81.2
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 9.5e-68 260.8 202 68.8
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 1.2e-67 260.4 189 71.4
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.2e-67 260.4 178 75.3
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 1.6e-67 260.0 197 68.5
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 1.8e-66 256.5 196 69.9
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 7.5e-65 251.1 144 84.0
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 7.5e-65 251.1 197 67.5
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 4.9e-64 248.4 144 82.6
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 1.1e-63 247.3 144 82.6
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 1.1e-63 247.3 144 82.6
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 1.4e-63 246.9 195 67.2
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 3.0e-61 239.2 206 66.5
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 6.6e-61 238.0 199 64.3
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 4.7e-43 178.7 199 53.8
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 9.9e-41 171.0 174 50.6
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 3.5e-38 162.5 174 50.6
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 9.6e-36 154.5 105 72.4
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 8.7e-29 131.3 74 90.5
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 8.7e-29 131.3 93 69.9
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 8.1e-27 124.8 197 41.6
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 6.9e-26 121.7 139 54.0
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.5e-25 120.6 89 69.7
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 3.1e-18 96.3 157 38.9
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 2.2e-16 90.1 117 42.7
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.9e-12 77.0 40 87.5
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 4.8e-11 72.4 40 75.0
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 5.3e-10 68.9 40 75.0
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 1.2e-09 67.8 43 67.4
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 1.3e-08 64.3 138 33.3
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 1.1e-07 61.2 86 36.0
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 3.2e-07 59.7 54 61.1
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 7.9e-06 55.1 32 87.5


User provided reference genes

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