Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 2.9e-131 471.9 228 100.0
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.9e-123 445.3 230 94.8
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 4.9e-123 444.5 230 94.3
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 7.1e-122 440.7 230 93.0
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.3e-120 436.4 230 92.6
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 3.2e-114 415.2 234 88.9
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 3.2e-114 415.2 234 88.0
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 3.0e-112 408.7 234 85.9
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 5.1e-104 381.3 232 83.2
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 2.9e-99 365.5 234 77.8
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 4.9e-99 364.8 177 98.9
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 1.4e-98 363.2 234 76.9
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 4.2e-98 361.7 225 78.2
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 7.1e-98 360.9 230 76.1
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 4.6e-97 358.2 215 79.5
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 4.6e-97 358.2 215 79.5
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.3e-96 356.7 233 76.0
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 5.1e-96 354.8 230 76.1
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 5.1e-96 354.8 233 76.0
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 8.7e-96 354.0 233 76.4
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 8.7e-96 354.0 215 79.1
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 2.5e-95 352.4 230 73.5
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 3.3e-95 352.1 215 77.7
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 4.3e-95 351.7 213 79.8
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 5.6e-95 351.3 215 77.7
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 5.6e-95 351.3 224 76.8
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 7.4e-95 350.9 232 75.4
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 2.1e-94 349.4 245 71.8
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 2.1e-94 349.4 231 71.9
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 4.8e-94 348.2 218 77.1
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 6.2e-94 347.8 234 74.4
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.1e-93 347.1 220 77.7
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 1.4e-93 346.7 232 71.1
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 3.1e-93 345.5 231 74.0
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 4.0e-93 345.1 215 77.2
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.9e-93 344.4 222 74.8
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 9.0e-93 344.0 215 76.3
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 1.2e-92 343.6 215 76.3
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 1.2e-92 343.6 231 73.2
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 1.5e-92 343.2 222 74.3
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 1.5e-92 343.2 215 76.7
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 1.5e-92 343.2 232 73.3
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.4e-92 342.0 222 74.8
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 7.6e-92 340.9 235 71.9
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 1.3e-91 340.1 214 77.6
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 1.3e-91 340.1 214 77.6
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 2.2e-91 339.3 229 72.1
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.2e-91 339.3 215 75.3
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.2e-91 339.3 215 75.3
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.9e-91 339.0 214 77.1
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 2.9e-91 339.0 214 76.6
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 3.8e-91 338.6 213 77.0
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 3.8e-91 338.6 212 78.3
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 3.8e-91 338.6 212 78.3
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 3.8e-91 338.6 231 72.7
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 3.8e-91 338.6 215 75.3
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 4.9e-91 338.2 232 72.4
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 8.4e-91 337.4 237 72.2
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 8.4e-91 337.4 215 76.3
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 8.4e-91 337.4 214 76.6
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.1e-90 337.0 244 69.7
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.1e-90 337.0 215 75.3
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 1.4e-90 336.7 214 76.6
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 1.9e-90 336.3 214 74.8
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 1.9e-90 336.3 215 74.9
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 1.9e-90 336.3 214 76.6
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 2.5e-90 335.9 214 76.6
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 4.2e-90 335.1 231 70.6
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 7.1e-90 334.3 213 73.7
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 7.1e-90 334.3 218 75.2
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 2.1e-89 332.8 214 75.2
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 4.6e-89 331.6 215 74.0
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 4.6e-89 331.6 214 75.2
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 1.3e-88 330.1 216 72.7
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 2.3e-88 329.3 215 74.9
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 3.9e-88 328.6 213 77.9
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 3.9e-88 328.6 213 77.9
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 3.9e-88 328.6 208 75.0
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 3.9e-88 328.6 215 73.0
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 5.1e-88 328.2 257 64.2
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.7e-88 327.8 229 70.3
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.1e-87 327.0 229 69.9
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 1.9e-87 326.2 212 75.0
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 2.5e-87 325.9 227 72.2
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 5.7e-87 324.7 209 76.1
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 9.6e-87 323.9 213 75.1
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 2.8e-86 322.4 211 74.4
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 8.2e-86 320.9 213 71.4
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 2.4e-85 319.3 215 72.1
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 4.0e-85 318.5 233 67.0
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 4.0e-85 318.5 231 68.8
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 5.3e-85 318.2 215 72.6
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 2.0e-84 316.2 215 71.6
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 3.4e-84 315.5 224 67.9
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 4.5e-84 315.1 224 67.9
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 5.8e-84 314.7 214 70.6
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 7.6e-84 314.3 209 71.3
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 1.0e-83 313.9 215 69.8
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 2.9e-83 312.4 218 68.8
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 2.9e-83 312.4 242 65.3
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 2.9e-83 312.4 223 67.7
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 3.8e-83 312.0 215 69.3
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.1e-82 310.5 217 71.4
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 1.4e-82 310.1 215 68.8
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.4e-82 310.1 215 68.8
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 1.9e-82 309.7 214 69.6
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 2.5e-82 309.3 224 66.5
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 2.5e-82 309.3 224 66.5
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 3.2e-82 308.9 214 67.8
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 4.2e-82 308.5 214 67.8
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 4.2e-82 308.5 224 66.5
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 4.2e-82 308.5 212 73.1
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 5.5e-82 308.1 215 67.0
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.1e-81 306.2 215 67.4
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.1e-81 306.2 215 67.4
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 6.1e-81 304.7 212 69.3
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 6.1e-81 304.7 214 70.6
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 2.3e-80 302.8 206 68.9
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 4.3e-79 298.5 214 68.7
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 4.3e-79 298.5 225 68.4
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 7.4e-79 297.7 213 67.6
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 4.8e-78 295.0 225 66.7
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 1.3e-75 287.0 232 64.7
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 2.2e-75 286.2 158 88.0
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 7.9e-73 277.7 214 66.8
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 4.3e-71 271.9 176 75.0
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.6e-68 262.7 174 72.4
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 3.2e-66 255.8 215 57.7
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 5.5e-66 255.0 212 60.4
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.4e-64 250.4 233 57.9
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 6.7e-64 248.1 215 60.9
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 4.8e-62 241.9 161 73.9
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.5e-60 236.9 183 67.8
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 6.5e-59 231.5 157 70.7
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.5e-55 220.3 157 72.0
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 9.7e-55 217.6 214 50.9
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 1.1e-53 214.2 214 52.3
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 5.5e-50 201.8 214 51.4
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 2.7e-49 199.5 214 50.9
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.4e-48 197.2 185 57.3
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 6.8e-48 194.9 123 75.6
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 3.8e-43 179.1 120 72.5
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.5e-42 177.2 165 56.4
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 1.4e-40 170.6 125 64.8
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 1.7e-35 153.7 212 38.7
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 1.5e-34 150.6 90 78.9
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 5.5e-34 148.7 99 69.7
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.2e-33 147.5 208 40.4
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 1.8e-32 143.7 150 52.7
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 4.4e-31 139.0 156 48.7
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 3.2e-29 132.9 81 74.1
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 9.2e-29 131.3 66 93.9
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 5.9e-28 128.6 74 89.2
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 1.1e-26 124.4 104 62.5
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 1.4e-24 117.5 89 62.9
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 2.0e-23 113.6 192 32.8
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.9e-22 109.8 80 70.0
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 3.2e-21 106.3 127 42.5
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.4e-16 90.9 54 75.9
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-16 90.9 54 75.9
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.4e-16 90.9 53 86.8
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.1e-16 89.7 56 71.4
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.2e-16 89.0 56 71.4
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 2.2e-14 83.6 222 29.3
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 7.1e-13 78.6 51 68.6
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.8e-12 75.1 48 72.9
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 8.6e-11 71.6 138 34.1
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 2.1e-09 67.0 43 76.7
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 2.3e-08 63.5 40 70.0
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 6.8e-08 62.0 50 62.0
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 4.4e-07 59.3 32 84.4
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 4.9e-06 55.8 40 62.5


User provided reference genes

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