Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 2.3e-197 692.2 389 100.0
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 6.3e-195 684.1 389 99.0
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 1.0e-184 650.2 389 94.9
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 1.1e-167 593.6 389 87.9
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 7.8e-145 517.7 329 84.2
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 3.4e-140 502.3 317 84.2
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 3.5e-121 439.1 325 74.2
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 4.9e-107 392.1 418 60.8
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 5.4e-106 388.7 401 62.1
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 2.8e-102 376.3 408 60.0
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 3.2e-98 362.8 369 57.2
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 4.2e-98 362.5 408 59.8
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 9.6e-95 351.3 409 57.5
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 6.2e-94 348.6 414 54.8
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 1.0e-91 341.3 336 60.4
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 1.7e-91 340.5 413 57.1
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 2.2e-91 340.1 413 55.0
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 4.9e-91 339.0 411 54.3
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 4.9e-91 339.0 423 55.6
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 6.0e-89 332.0 415 53.5
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 1.8e-88 330.5 409 54.5
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 3.9e-88 329.3 419 54.9
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 6.7e-88 328.6 384 52.1
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 6.7e-88 328.6 406 55.7
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 1.9e-87 327.0 427 54.6
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 2.5e-87 326.6 376 54.0
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 3.3e-87 326.2 389 55.8
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 9.6e-87 324.7 420 54.8
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 9.6e-87 324.7 414 54.3
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 9.6e-87 324.7 346 62.7
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 6.2e-86 322.0 385 53.0
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 8.2e-86 321.6 420 54.8
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 1.1e-85 321.2 414 54.1
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 2.4e-85 320.1 264 65.2
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 4.1e-85 319.3 416 54.1
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 5.3e-85 318.9 420 54.3
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 6.9e-85 318.5 411 52.8
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 1.2e-84 317.8 445 48.3
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 2.0e-84 317.0 331 56.5
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.6e-84 316.6 414 53.1
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 3.4e-84 316.2 434 51.8
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 3.4e-84 316.2 424 52.8
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 4.5e-84 315.8 405 52.6
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 1.3e-83 314.3 373 52.3
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 1.7e-83 313.9 372 54.0
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 1.7e-83 313.9 387 51.7
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 2.9e-83 313.2 402 54.0
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 1.2e-81 307.8 442 48.0
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 1.2e-81 307.8 411 51.3
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 3.5e-81 306.2 395 53.2
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 7.9e-81 305.1 409 53.3
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 3.0e-80 303.1 421 51.1
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 1.5e-79 300.8 414 51.2
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 1.5e-79 300.8 400 53.8
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 1.9e-79 300.4 414 51.7
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 1.9e-79 300.4 329 55.0
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 9.7e-79 298.1 444 46.4
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 1.6e-78 297.4 325 53.2
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 2.8e-78 296.6 358 53.6
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 3.7e-78 296.2 425 48.9
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 1.4e-77 294.3 412 50.0
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 1.4e-77 294.3 413 48.2
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 1.8e-77 293.9 519 45.3
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 6.9e-77 292.0 392 52.6
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 1.2e-76 291.2 401 53.1
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 3.4e-76 289.7 440 47.5
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 3.8e-75 286.2 398 53.5
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 5.0e-75 285.8 247 63.6
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 3.2e-74 283.1 430 47.9
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 7.2e-74 282.0 440 48.6
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 2.1e-73 280.4 385 51.2
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 2.2e-70 270.4 361 50.4
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 1.1e-69 268.1 252 62.7
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 4.1e-69 266.2 405 44.0
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 5.0e-67 259.2 345 53.6
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 2.5e-66 256.9 396 47.2
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 9.4e-66 255.0 416 46.4
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 3.6e-65 253.1 421 46.8
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 7.9e-65 251.9 394 50.3
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.0e-64 250.0 402 50.0
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 2.0e-63 247.3 403 46.9
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 6.3e-62 242.3 409 44.0
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 1.4e-61 241.1 232 58.6
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 9.1e-61 238.4 414 48.3
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 3.5e-60 236.5 394 42.6
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 7.7e-60 235.3 390 47.2
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 1.0e-59 235.0 396 46.5
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 1.0e-59 235.0 377 42.7
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 2.9e-59 233.4 388 45.1
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 5.0e-59 232.6 388 45.4
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 5.0e-59 232.6 226 59.7
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 8.5e-59 231.9 412 46.6
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 4.7e-57 226.1 262 51.9
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 4.7e-57 226.1 262 51.9
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 4.7e-57 226.1 346 43.6
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 1.8e-56 224.2 402 45.3
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 2.3e-56 223.8 395 45.1
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 3.0e-56 223.4 399 48.4
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.0e-56 223.0 400 47.5
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 1.1e-55 221.5 421 44.2
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 2.6e-55 220.3 398 46.5
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 4.8e-54 216.1 325 44.3
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 6.3e-54 215.7 315 49.2
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 8.2e-54 215.3 396 41.9
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 1.4e-53 214.5 231 53.7
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 4.5e-52 209.5 390 43.1
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 1.3e-51 208.0 389 45.2
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 1.7e-51 207.6 234 55.1
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 3.2e-50 203.4 395 44.8
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 4.7e-49 199.5 398 44.0
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 1.8e-48 197.6 255 53.3
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 5.2e-48 196.1 395 41.8
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 5.4e-45 186.0 363 40.8
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 1.0e-43 181.8 221 48.0
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 4.4e-39 166.4 229 42.8
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 2.2e-38 164.1 375 35.7
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.7e-38 163.3 382 42.7
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 1.6e-36 157.9 261 39.1
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 2.3e-35 154.1 310 39.0
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 2.9e-35 153.7 269 40.1
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.4e-23 113.2 244 46.3
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 5.8e-23 112.8 143 48.3
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 7.8e-20 102.4 85 58.8
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 1.1e-18 98.6 234 37.6
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 1.8e-16 91.3 143 43.4
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 4.0e-16 90.1 179 39.7
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.9e-14 84.0 94 51.1
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 1.2e-12 78.6 84 61.9
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 2.7e-12 77.4 183 26.8
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 6.6e-11 72.8 105 38.1
Lsat_1_v5_gn_5_14961 Lactuca sativa HOM05D004981 ORTHO05D005635 9.5e-10 68.9 149 41.6
CDE10G1193 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 3.6e-09 67.0 84 52.4
Lsat_1_v5_gn_4_93920 Lactuca sativa HOM05D004981 ORTHO05D005635 3.6e-09 67.0 159 44.0
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 5.2e-08 63.2 134 36.6
VMungo1383G0650 Vigna mungo HOM05D004981 ORTHO05D005635 3.4e-07 60.5 158 34.8
BcaC05g24776 Brassica carinata HOM05D004981 ORTHO05D005635 2.9e-06 57.4 53 49.1


User provided reference genes

Program Settings