Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 3.5e-61 238.0 114 100.0
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 4.5e-61 237.7 114 99.1
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 1.7e-60 235.7 114 98.2
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 4.0e-57 224.6 114 90.4
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 2.0e-56 222.2 114 92.1
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 4.4e-56 221.1 114 90.4
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 4.9e-55 217.6 112 91.1
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 3.0e-52 208.4 114 82.5
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 2.5e-51 205.3 114 80.7
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 5.6e-51 204.1 112 79.5
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 8.0e-50 200.3 114 78.1
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 8.0e-50 200.3 114 75.4
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.0e-49 199.9 114 72.8
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 1.4e-49 199.5 114 76.3
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 2.3e-49 198.7 114 74.6
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 2.3e-49 198.7 114 73.7
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 3.1e-49 198.4 114 76.3
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 3.1e-49 198.4 114 75.4
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 3.1e-49 198.4 114 73.7
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 1.2e-48 196.4 113 77.9
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 1.2e-48 196.4 114 74.6
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 1.5e-48 196.1 114 75.4
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 3.4e-48 194.9 112 73.2
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 3.4e-48 194.9 114 73.7
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 3.4e-48 194.9 114 75.4
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 4.4e-48 194.5 113 76.1
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 4.4e-48 194.5 114 77.2
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 7.5e-48 193.7 114 75.4
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 7.5e-48 193.7 114 72.8
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 7.5e-48 193.7 112 73.2
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 7.5e-48 193.7 114 73.7
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 7.5e-48 193.7 112 73.2
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 7.5e-48 193.7 114 73.7
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 7.5e-48 193.7 114 75.4
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 9.8e-48 193.4 114 74.6
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 1.3e-47 193.0 114 71.9
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 1.3e-47 193.0 114 73.7
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 1.7e-47 192.6 114 71.1
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 2.2e-47 192.2 114 74.6
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.2e-47 192.2 114 72.8
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 2.9e-47 191.8 114 71.1
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 2.9e-47 191.8 114 74.6
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 3.7e-47 191.4 114 72.8
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 3.7e-47 191.4 114 74.6
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 3.7e-47 191.4 114 71.9
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 3.7e-47 191.4 114 71.9
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 3.7e-47 191.4 114 75.4
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 4.9e-47 191.0 114 75.4
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 4.9e-47 191.0 114 72.8
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 6.4e-47 190.7 114 71.9
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 6.4e-47 190.7 114 72.8
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 6.4e-47 190.7 112 73.2
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 6.4e-47 190.7 114 70.2
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 6.4e-47 190.7 112 73.2
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 8.3e-47 190.3 114 74.6
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 8.3e-47 190.3 114 69.3
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 8.3e-47 190.3 114 75.4
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 8.3e-47 190.3 114 73.7
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.1e-46 189.9 114 71.9
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 1.1e-46 189.9 114 70.2
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 1.4e-46 189.5 113 71.7
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 2.4e-46 188.7 114 70.2
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 4.1e-46 188.0 114 73.7
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 5.4e-46 187.6 114 71.1
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 5.4e-46 187.6 114 71.1
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 5.4e-46 187.6 114 71.9
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 5.4e-46 187.6 114 71.9
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 5.4e-46 187.6 114 70.2
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 7.0e-46 187.2 114 75.4
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 7.0e-46 187.2 112 72.3
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 9.2e-46 186.8 114 71.9
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 9.2e-46 186.8 114 71.1
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 9.2e-46 186.8 114 71.1
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 1.2e-45 186.4 114 69.3
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 1.6e-45 186.0 114 71.9
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 1.6e-45 186.0 114 67.5
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 2.0e-45 185.7 110 72.7
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 3.5e-45 184.9 110 72.7
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 4.6e-45 184.5 113 71.7
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 4.6e-45 184.5 114 70.2
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 6.0e-45 184.1 114 70.2
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 6.0e-45 184.1 114 71.1
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 7.8e-45 183.7 114 71.1
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 1.0e-44 183.3 114 72.8
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 1.3e-44 183.0 112 69.6
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 1.7e-44 182.6 114 70.2
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 2.3e-44 182.2 114 70.2
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 2.3e-44 182.2 114 70.2
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 2.3e-44 182.2 114 71.1
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 3.0e-44 181.8 114 69.3
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 6.6e-44 180.6 114 65.8
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 8.6e-44 180.3 114 72.8
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.5e-43 179.5 113 67.3
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.5e-43 179.5 114 68.4
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 1.9e-43 179.1 114 66.7
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 3.3e-43 178.3 114 67.5
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 3.3e-43 178.3 113 66.4
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 3.3e-43 178.3 114 71.9
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 4.3e-43 177.9 114 68.4
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 4.3e-43 177.9 114 69.3
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 5.6e-43 177.6 114 70.2
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 5.6e-43 177.6 114 67.5
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 5.6e-43 177.6 114 64.9
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 7.3e-43 177.2 114 66.7
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 7.3e-43 177.2 110 67.3
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 9.5e-43 176.8 114 66.7
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 9.5e-43 176.8 114 66.7
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 9.5e-43 176.8 114 66.7
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 9.5e-43 176.8 114 66.7
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 1.2e-42 176.4 114 63.2
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 1.2e-42 176.4 114 67.5
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 1.6e-42 176.0 98 76.5
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 2.8e-42 175.3 112 66.1
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 3.6e-42 174.9 114 64.9
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 4.7e-42 174.5 114 66.7
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 6.2e-42 174.1 114 66.7
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 8.1e-42 173.7 114 65.8
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 8.1e-42 173.7 114 67.5
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 1.4e-41 172.9 114 67.5
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 1.4e-41 172.9 112 66.1
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.4e-41 172.9 114 67.5
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 1.8e-41 172.6 114 65.8
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 8.9e-41 170.2 114 64.0
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.2e-40 169.9 114 68.4
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 2.0e-40 169.1 114 65.8
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 9.2e-38 160.2 114 59.6
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 3.5e-37 158.3 114 57.9
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 4.6e-37 157.9 114 61.4
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 5.6e-35 151.0 94 72.3
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 1.8e-33 146.0 85 75.3
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 2.2e-31 139.0 82 70.7
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 4.9e-31 137.9 114 57.9
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 8.4e-31 137.1 84 70.2
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 6.6e-28 127.5 111 53.2
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 1.2e-26 123.2 72 76.4
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 1.6e-26 122.9 115 52.2
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 7.6e-24 114.0 110 45.5
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 9.9e-24 113.6 74 62.2
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.9e-22 109.4 68 70.6
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 2.4e-22 109.0 112 44.6
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 9.6e-19 97.1 115 44.3
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 6.9e-17 90.9 108 44.4
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 7.6e-16 87.4 91 49.5
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.3e-12 76.6 58 56.9
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 3.0e-12 75.5 48 66.7
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 6.9e-09 64.3 41 58.5
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 2.9e-07 58.9 42 57.1
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 5.5e-06 54.7 42 59.5


User provided reference genes

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