Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 9.7e-217 756.5 379 100.0
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 3.6e-211 738.0 379 97.6
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 7.4e-209 730.3 379 97.4
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 1.4e-178 629.8 383 84.1
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 1.2e-161 573.5 385 78.4
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 1.1e-154 550.4 355 81.1
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 3.1e-154 548.9 353 80.7
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 3.1e-122 442.6 387 61.8
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 2.2e-120 436.4 355 65.1
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 7.9e-118 427.9 330 66.1
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 2.3e-117 426.4 330 65.8
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 3.9e-117 425.6 331 65.0
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 1.5e-116 423.7 304 69.4
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 1.3e-112 410.6 373 59.8
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 1.9e-111 406.8 295 69.8
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 3.2e-111 406.0 325 65.5
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 5.5e-111 405.2 293 69.6
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 9.3e-111 404.4 344 63.1
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 3.5e-110 402.5 406 55.2
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 3.5e-110 402.5 295 67.1
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 1.0e-109 401.0 346 59.0
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 2.3e-109 399.8 270 72.6
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 6.7e-109 398.3 386 57.0
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 8.7e-109 397.9 276 70.7
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 1.5e-108 397.1 295 66.8
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 1.5e-108 397.1 346 59.0
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 4.3e-108 395.6 302 66.2
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 7.4e-108 394.8 309 64.7
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 7.4e-108 394.8 323 63.8
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 1.3e-107 394.0 303 65.3
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 3.7e-107 392.5 303 67.0
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 8.2e-107 391.3 390 56.2
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 1.4e-106 390.6 299 65.6
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 3.1e-106 389.4 362 58.0
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 4.1e-106 389.0 288 68.8
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 4.1e-106 389.0 290 69.0
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 5.3e-106 388.7 302 66.2
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 1.2e-105 387.5 290 66.6
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 1.2e-105 387.5 303 65.7
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 1.5e-105 387.1 378 56.6
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 2.6e-105 386.3 322 61.5
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 5.9e-105 385.2 311 65.0
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 1.0e-104 384.4 325 61.2
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 1.0e-104 384.4 300 64.3
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 1.7e-104 383.6 371 56.6
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 1.7e-104 383.6 375 56.8
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 2.2e-104 383.3 288 67.0
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 5.0e-104 382.1 276 67.8
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 8.5e-104 381.3 330 60.3
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 1.1e-103 380.9 295 63.1
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 4.2e-103 379.0 283 65.4
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 5.5e-103 378.6 308 61.7
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 7.2e-103 378.3 292 64.0
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.2e-102 377.5 321 60.1
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.2e-102 377.5 293 63.8
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 1.2e-102 377.5 271 66.4
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 1.6e-102 377.1 329 60.8
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 1.6e-102 377.1 304 62.8
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 2.7e-102 376.3 292 63.7
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 2.7e-102 376.3 381 55.6
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 3.6e-102 375.9 381 54.9
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 3.6e-102 375.9 375 56.0
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 1.0e-101 374.4 294 62.2
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.4e-101 374.0 321 59.5
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 1.8e-101 373.6 332 58.7
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 1.8e-101 373.6 374 54.8
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 1.8e-101 373.6 330 60.0
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 6.7e-101 371.7 306 62.7
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 2.5e-100 369.8 313 59.4
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 7.4e-100 368.2 294 61.2
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.3e-99 367.5 294 63.9
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 4.8e-99 365.5 303 62.4
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 1.8e-98 363.6 297 65.0
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 2.4e-98 363.2 373 53.6
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 2.4e-98 363.2 272 67.3
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 3.1e-98 362.8 400 53.8
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 5.9e-97 358.6 333 59.5
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 1.3e-96 357.5 375 52.5
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 1.7e-96 357.1 375 54.1
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.4e-95 354.0 379 52.2
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 3.2e-95 352.8 417 50.6
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 5.5e-95 352.1 375 51.7
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 5.5e-95 352.1 252 69.0
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 9.4e-95 351.3 294 60.9
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 2.7e-94 349.7 308 59.1
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 3.9e-93 345.9 373 51.7
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 3.9e-93 345.9 293 62.5
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 6.7e-93 345.1 365 52.6
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 1.5e-92 344.0 297 59.6
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 2.6e-92 343.2 332 55.4
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 2.6e-92 343.2 328 54.9
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 3.3e-92 342.8 310 57.7
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 3.3e-92 342.8 298 59.7
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 3.3e-92 342.8 298 59.7
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 9.7e-92 341.3 275 58.9
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 3.7e-91 339.3 298 59.4
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 3.7e-91 339.3 298 59.4
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 1.4e-90 337.4 261 64.8
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 1.5e-89 334.0 269 61.3
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 2.6e-89 333.2 239 69.0
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 3.4e-89 332.8 314 56.4
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 4.5e-89 332.4 334 53.9
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 1.0e-88 331.3 355 52.4
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.7e-88 330.5 241 67.6
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 2.2e-88 330.1 341 53.1
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 3.8e-88 329.3 274 60.9
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 5.0e-88 328.9 481 44.5
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 8.5e-88 328.2 245 66.1
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 2.5e-87 326.6 225 68.9
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 2.3e-85 320.1 354 51.1
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 5.5e-79 298.9 304 52.0
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 7.7e-73 278.5 308 48.4
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 1.6e-70 270.8 294 52.4
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 6.1e-70 268.9 228 58.8
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 9.8e-68 261.5 230 58.3
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 2.7e-65 253.4 187 66.8
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 1.8e-61 240.7 309 44.0
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 9.8e-60 235.0 190 57.4
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 2.7e-57 226.9 306 44.1
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 3.2e-42 176.8 234 41.9
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 7.0e-42 175.6 138 64.5
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 1.7e-40 171.0 290 39.7
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 8.1e-38 162.2 143 58.7
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 3.0e-24 117.1 351 28.5
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 6.9e-21 105.9 73 71.2
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 8.7e-16 89.0 64 70.3
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 8.4e-11 72.4 44 75.0
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 6.0e-09 66.2 84 40.5


User provided reference genes

Program Settings