Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 1.2e-198 696.4 377 100.0
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 3.4e-198 694.9 376 99.7
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 1.3e-197 693.0 377 99.2
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.8e-168 595.5 369 88.9
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.2e-166 590.1 368 88.9
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 3.5e-166 588.6 378 84.9
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 1.7e-152 543.1 360 82.8
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 5.0e-149 531.6 378 79.6
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 4.7e-147 525.0 384 76.8
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.2e-144 516.2 343 81.6
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.4e-143 513.5 341 82.4
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 7.0e-143 511.1 367 78.2
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 6.0e-142 508.1 338 81.7
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.0e-141 507.3 365 77.0
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 1.3e-141 506.9 374 74.9
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 3.9e-141 505.4 365 74.8
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.5e-140 503.4 371 75.7
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 1.5e-140 503.4 375 74.4
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 2.5e-140 502.7 336 80.7
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 4.3e-140 501.9 374 74.3
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 5.6e-140 501.5 343 80.8
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 7.3e-140 501.1 378 75.4
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 9.5e-140 500.7 336 81.8
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 3.6e-139 498.8 339 80.2
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 4.7e-139 498.4 375 75.7
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 1.4e-138 496.9 352 77.0
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 2.3e-138 496.1 326 83.1
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 3.4e-137 492.3 367 76.0
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 1.7e-136 490.0 379 73.1
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 3.7e-136 488.8 374 73.0
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 4.9e-136 488.4 327 81.7
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 2.4e-135 486.1 374 72.7
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 5.4e-135 485.0 339 77.0
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 7.1e-135 484.6 373 72.4
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.2e-134 483.8 344 77.0
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 1.6e-134 483.4 374 72.5
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 1.6e-134 483.4 373 72.4
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 1.0e-133 480.7 375 72.8
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 1.3e-133 480.3 370 72.4
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 2.3e-133 479.6 378 71.4
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 3.9e-133 478.8 375 71.2
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 8.6e-133 477.6 375 70.9
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 8.6e-133 477.6 376 71.3
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.1e-132 477.2 375 72.8
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 1.1e-132 477.2 377 69.8
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 1.9e-132 476.5 334 76.0
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.9e-132 476.5 377 67.4
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 1.9e-132 476.5 347 74.4
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 2.5e-132 476.1 334 76.3
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 2.5e-132 476.1 370 70.3
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 3.3e-132 475.7 376 69.9
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 3.3e-132 475.7 375 70.4
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 4.3e-132 475.3 334 76.9
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 4.3e-132 475.3 375 70.4
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 7.3e-132 474.6 375 70.9
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 7.3e-132 474.6 376 68.9
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.6e-131 473.4 376 69.9
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 1.6e-131 473.4 375 70.9
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 1.6e-131 473.4 374 71.1
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 1.6e-131 473.4 375 70.1
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 2.1e-131 473.0 375 70.1
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 2.1e-131 473.0 375 70.1
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 2.8e-131 472.6 376 70.2
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 2.8e-131 472.6 376 70.2
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 4.7e-131 471.9 375 70.1
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 4.7e-131 471.9 375 70.1
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 6.2e-131 471.5 326 77.9
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 8.1e-131 471.1 377 72.1
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 8.1e-131 471.1 375 69.3
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 1.1e-130 470.7 376 69.1
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 1.4e-130 470.3 326 77.9
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 1.8e-130 469.9 336 74.7
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 2.3e-130 469.5 376 68.9
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 2.3e-130 469.5 375 69.3
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 3.1e-130 469.2 376 69.4
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 4.0e-130 468.8 374 70.6
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 6.8e-130 468.0 325 77.8
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 8.9e-130 467.6 375 69.3
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 1.2e-129 467.2 330 78.8
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 2.0e-129 466.5 355 73.0
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 2.6e-129 466.1 372 69.4
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 4.4e-129 465.3 361 70.1
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.6e-129 464.5 355 72.7
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 1.7e-128 463.4 337 76.6
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 1.7e-128 463.4 354 73.2
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 2.2e-128 463.0 380 68.9
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 2.9e-128 462.6 370 68.6
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 3.7e-128 462.2 355 72.7
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 6.4e-128 461.5 323 75.9
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 8.4e-128 461.1 354 72.3
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 1.1e-127 460.7 321 77.9
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 3.2e-127 459.1 327 75.2
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 1.2e-126 457.2 372 68.5
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 1.2e-126 457.2 337 74.8
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 2.7e-126 456.1 376 69.9
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 6.0e-126 454.9 327 75.2
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.0e-126 454.9 352 71.0
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.7e-125 453.4 375 69.9
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.3e-125 453.0 325 75.1
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 2.3e-125 453.0 345 73.3
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 2.3e-125 453.0 325 75.4
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 3.0e-125 452.6 329 72.6
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 3.9e-125 452.2 368 70.1
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 5.6e-124 448.4 364 69.5
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 1.6e-123 446.8 364 69.5
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.4e-122 443.7 375 68.0
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 5.8e-121 438.3 324 74.7
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 8.4e-120 434.5 328 72.6
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.1e-119 434.1 324 72.2
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 1.7e-117 426.8 375 67.5
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 3.9e-117 425.6 298 75.2
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 8.7e-117 424.5 298 74.8
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.5e-116 423.7 298 74.8
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 5.6e-116 421.8 375 66.7
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.1e-111 407.5 360 63.9
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 1.4e-111 407.1 337 67.1
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.5e-108 397.1 375 59.5
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 1.1e-106 391.0 315 70.5
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 5.8e-105 385.2 326 64.4
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 8.4e-104 381.3 327 63.9
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 6.7e-101 371.7 360 58.3
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 4.3e-100 369.0 373 62.2
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 6.2e-99 365.2 302 67.9
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 1.2e-97 360.9 243 81.9
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.6e-94 350.5 326 62.0
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 5.1e-93 345.5 253 73.9
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 5.1e-93 345.5 245 77.1
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 9.0e-90 334.7 336 56.8
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 1.4e-87 327.4 202 79.7
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.9e-87 327.0 297 59.9
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 1.9e-84 317.0 336 54.8
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 2.2e-83 313.5 326 58.0
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 2.6e-81 306.6 322 55.9
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 3.9e-77 292.7 324 56.5
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.6e-70 269.6 240 59.2
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 3.0e-69 266.5 209 68.9
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.0e-53 214.9 208 56.7
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 7.5e-52 208.8 127 81.9
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 2.3e-45 187.2 164 60.4
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 3.0e-37 160.2 165 55.2
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 1.2e-36 158.3 106 74.5
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.2e-36 158.3 90 83.3
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 7.3e-31 139.0 100 71.0
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 3.4e-28 130.2 128 55.5
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 7.5e-28 129.0 95 70.5
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 5.0e-24 116.3 103 59.2
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 6.6e-24 115.9 78 70.5
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 1.5e-23 114.8 284 32.0
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 5.6e-23 112.8 94 62.8
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 3.6e-22 110.2 130 52.3
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 8.1e-22 109.0 138 49.3
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 9.8e-20 102.1 102 52.0
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 6.4e-19 99.4 83 60.2
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 1.4e-18 98.2 66 75.8
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 3.9e-16 90.1 314 30.3
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 2.8e-14 84.0 59 71.2
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 4.7e-14 83.2 309 27.8
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 1.4e-13 81.6 178 37.1
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 7.1e-10 69.3 62 61.3
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.1e-10 69.3 43 74.4
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.2e-10 68.9 43 72.1
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.6e-09 68.2 50 68.0
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.5e-09 67.0 49 63.3
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 6.0e-09 66.2 43 72.1
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.7e-08 64.7 43 72.1
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.6e-08 62.8 42 69.0
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 8.6e-08 62.4 47 61.7
Ca_29028_v3 Cicer arietinum L. HOM05D020748 ORTHO05D028602 4.3e-07 60.1 135 28.9
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.6e-07 59.7 41 68.3
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 9.6e-07 58.9 67 73.1
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 1.6e-06 58.2 65 49.2
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 3.6e-06 57.0 65 49.2


User provided reference genes

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