Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 1.4e-61 240.0 178 100.0
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 1.4e-53 213.4 178 90.4
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 9.6e-42 174.1 112 87.5
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.6e-28 130.2 116 71.6
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 6.1e-28 128.3 116 71.6
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 1.4e-21 107.1 114 58.8
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 3.0e-19 99.4 83 61.4
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 3.0e-19 99.4 92 62.0
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 1.1e-18 97.4 59 79.7
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 1.5e-18 97.1 55 83.6
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.5e-18 97.1 63 79.4
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 2.0e-18 96.7 124 53.2
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 3.3e-18 95.9 124 48.4
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 5.7e-18 95.1 54 81.5
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 2.2e-17 93.2 121 49.6
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 2.2e-17 93.2 52 84.6
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.8e-17 92.8 54 79.6
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 2.8e-17 92.8 54 79.6
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 3.7e-17 92.4 80 63.8
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 3.7e-17 92.4 46 93.5
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 4.8e-17 92.0 86 58.1
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 4.8e-17 92.0 86 58.1
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 4.8e-17 92.0 86 58.1
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 4.8e-17 92.0 86 58.1
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 6.3e-17 91.7 86 58.1
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 6.3e-17 91.7 53 81.1
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 6.3e-17 91.7 55 78.2
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 6.3e-17 91.7 77 61.0
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 1.1e-16 90.9 54 77.8
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 1.1e-16 90.9 85 58.8
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 1.1e-16 90.9 85 58.8
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 1.1e-16 90.9 111 46.8
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.4e-16 90.5 54 77.8
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 1.4e-16 90.5 64 71.9
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 1.4e-16 90.5 64 71.9
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 1.4e-16 90.5 76 67.1
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.4e-16 90.5 47 89.4
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 1.8e-16 90.1 52 80.8
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 2.4e-16 89.7 78 64.1
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 2.4e-16 89.7 123 49.6
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 2.4e-16 89.7 80 58.8
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 4.1e-16 89.0 53 75.5
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 4.1e-16 89.0 54 75.9
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 5.3e-16 88.6 99 54.5
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 5.3e-16 88.6 118 49.2
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 6.9e-16 88.2 70 65.7
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 9.1e-16 87.8 51 80.4
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 9.1e-16 87.8 119 44.5
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 9.1e-16 87.8 54 75.9
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.2e-15 87.4 44 88.6
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 1.5e-15 87.0 79 63.3
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 1.5e-15 87.0 51 78.4
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.5e-15 87.0 58 70.7
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 1.5e-15 87.0 89 55.1
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 1.5e-15 87.0 54 79.6
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.6e-15 86.3 50 80.0
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.4e-15 85.9 49 81.6
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 3.4e-15 85.9 49 81.6
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 3.4e-15 85.9 50 80.0
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 4.5e-15 85.5 126 46.8
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 5.9e-15 85.1 78 57.7
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 5.9e-15 85.1 47 83.0
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.9e-15 85.1 50 78.0
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 1.3e-14 84.0 127 44.9
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 2.2e-14 83.2 116 56.9
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 2.2e-14 83.2 47 83.0
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 3.8e-14 82.4 51 76.5
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 3.8e-14 82.4 76 63.2
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 3.8e-14 82.4 54 74.1
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 5.0e-14 82.0 49 79.6
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 8.5e-14 81.3 44 88.6
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 1.1e-13 80.9 45 86.7
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 1.4e-13 80.5 48 77.1
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.4e-13 80.5 48 77.1
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.4e-13 80.5 48 77.1
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.9e-13 80.1 52 75.0
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.9e-13 80.1 51 76.5
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.9e-13 80.1 51 76.5
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 2.5e-13 79.7 41 87.8
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 3.2e-13 79.3 68 60.3
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 3.2e-13 79.3 70 62.9
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 5.5e-13 78.6 39 92.3
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 1.2e-12 77.4 54 70.4
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 1.2e-12 77.4 52 71.2
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 1.2e-12 77.4 52 69.2
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 1.6e-12 77.0 120 44.2
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 1.6e-12 77.0 44 81.8
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.6e-12 77.0 40 87.5
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 2.1e-12 76.6 53 69.8
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 2.1e-12 76.6 84 54.8
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 2.7e-12 76.3 62 64.5
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 2.7e-12 76.3 47 76.6
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 2.7e-12 76.3 40 87.5
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 4.7e-12 75.5 94 47.9
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 6.1e-12 75.1 45 77.8
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 6.1e-12 75.1 56 67.9
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 8.0e-12 74.7 48 72.9
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 1.4e-11 73.9 45 73.3
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 1.8e-11 73.6 47 70.2
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.8e-11 73.6 72 51.4
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 1.8e-11 73.6 62 66.1
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 2.3e-11 73.2 45 75.6
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 3.0e-11 72.8 44 75.0
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 3.9e-11 72.4 43 81.4
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 6.7e-11 71.6 39 82.1
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 6.7e-11 71.6 108 41.7
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 8.8e-11 71.2 40 82.5
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 1.1e-10 70.9 46 73.9
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 2.6e-10 69.7 35 91.4
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 2.6e-10 69.7 35 91.4
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 3.3e-10 69.3 50 72.0
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 4.4e-10 68.9 114 42.1
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 4.4e-10 68.9 69 52.2
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 5.7e-10 68.6 36 83.3
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 5.7e-10 68.6 40 80.0
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 5.7e-10 68.6 53 64.2
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 7.4e-10 68.2 43 67.4
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 7.4e-10 68.2 61 57.4
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 7.4e-10 68.2 50 72.0
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 9.7e-10 67.8 40 77.5
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 9.7e-10 67.8 45 71.1
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 1.3e-09 67.4 124 37.9
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 2.8e-09 66.2 61 55.7
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 3.7e-09 65.9 35 82.9
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 4.8e-09 65.5 35 80.0
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 4.8e-09 65.5 35 82.9
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 4.5e-07 58.9 43 60.5
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 1.0e-06 57.8 49 53.1
HPP92_004788 Vanilla planifolia HOM05D005853 ORTHO05D007308 5.0e-06 55.5 35 71.4


User provided reference genes

Program Settings