Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 2.4e-190 668.7 341 100.0
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 6.5e-188 660.6 341 98.8
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 1.5e-179 632.9 341 94.1
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 9.8e-168 593.6 341 87.7
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 2.1e-162 575.9 341 85.6
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 5.9e-157 557.8 341 83.6
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 1.3e-132 476.9 265 86.0
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 1.5e-131 473.4 299 75.9
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 4.3e-131 471.9 350 68.0
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 1.2e-130 470.3 331 69.8
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 1.1e-129 467.2 334 69.5
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 8.9e-129 464.2 335 67.5
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 7.6e-128 461.1 341 67.4
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.9e-127 459.1 345 65.5
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 3.7e-127 458.8 333 68.8
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 6.4e-127 458.0 334 67.1
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 6.4e-127 458.0 334 67.1
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 6.0e-125 451.4 297 72.4
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 1.0e-124 450.7 341 65.4
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 1.0e-124 450.7 295 72.9
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 1.7e-124 449.9 337 65.6
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 2.3e-124 449.5 296 71.3
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 3.9e-124 448.7 322 68.0
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 3.9e-124 448.7 315 69.2
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 1.1e-123 447.2 329 65.3
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 1.1e-123 447.2 329 65.3
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 2.5e-123 446.0 296 71.6
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 4.3e-123 445.3 335 66.0
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 5.6e-123 444.9 298 69.8
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 7.3e-123 444.5 302 69.5
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 7.3e-123 444.5 342 64.3
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 9.6e-123 444.1 329 66.3
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 1.2e-122 443.7 298 69.5
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 1.2e-122 443.7 298 69.5
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 1.6e-122 443.4 338 66.6
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 2.1e-122 443.0 331 66.8
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 3.6e-122 442.2 299 70.6
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 3.6e-122 442.2 296 69.6
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 4.7e-122 441.8 339 64.3
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 8.1e-122 441.0 331 66.5
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 1.1e-121 440.7 294 73.5
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 1.4e-121 440.3 296 69.9
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 8.9e-121 437.6 331 64.4
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 1.2e-120 437.2 297 70.0
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 4.4e-120 435.3 349 62.5
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 2.2e-119 433.0 329 63.5
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 2.2e-119 433.0 345 62.6
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.9e-119 432.6 335 64.8
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 3.8e-119 432.2 335 62.4
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 4.9e-119 431.8 341 62.2
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 4.2e-118 428.7 299 66.9
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 4.2e-118 428.7 340 63.8
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 5.4e-118 428.3 294 70.7
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 1.2e-117 427.2 361 61.2
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 1.2e-117 427.2 344 62.2
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.2e-117 427.2 294 71.4
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 1.2e-117 427.2 331 64.0
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.7e-117 426.0 298 67.8
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.7e-117 426.0 294 71.1
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 2.7e-117 426.0 298 67.4
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 4.6e-117 425.2 332 65.7
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 6.0e-117 424.9 330 65.8
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 6.0e-117 424.9 336 63.1
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 1.7e-116 423.3 330 62.4
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 1.7e-116 423.3 295 68.8
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 1.7e-116 423.3 368 59.2
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 5.1e-116 421.8 295 68.5
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 5.1e-116 421.8 345 62.0
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 5.1e-116 421.8 333 64.0
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 6.6e-116 421.4 322 66.8
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 8.7e-116 421.0 326 63.2
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 1.1e-115 420.6 379 56.5
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 1.9e-115 419.9 328 63.7
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 1.9e-115 419.9 343 63.0
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 1.9e-115 419.9 354 60.5
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 1.9e-115 419.9 302 66.6
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 2.5e-115 419.5 295 69.8
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.5e-115 419.5 298 67.1
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 3.3e-115 419.1 333 63.1
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 4.3e-115 418.7 315 63.5
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 5.6e-115 418.3 295 68.5
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.3e-114 417.2 296 65.9
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.3e-114 417.2 296 65.9
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 3.6e-114 415.6 297 69.4
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 6.2e-114 414.8 336 62.2
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 6.2e-114 414.8 392 55.4
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 1.4e-113 413.7 332 61.1
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 1.8e-113 413.3 296 68.9
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.8e-113 413.3 295 68.1
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 3.1e-113 412.5 296 68.6
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 5.3e-113 411.8 351 60.7
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 1.5e-112 410.2 295 65.8
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 4.4e-112 408.7 295 67.1
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 9.9e-112 407.5 295 65.8
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 9.9e-112 407.5 295 65.8
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 2.9e-111 406.0 289 66.4
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 8.4e-111 404.4 295 65.1
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 7.1e-110 401.4 336 59.8
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.6e-109 398.7 294 68.4
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 2.3e-108 396.4 299 62.9
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 3.9e-108 395.6 294 67.0
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.1e-107 394.0 321 59.5
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 5.6e-107 391.7 303 64.4
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.0e-105 385.6 289 65.1
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 5.3e-105 385.2 299 63.2
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 6.9e-105 384.8 299 63.2
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 5.8e-104 381.7 348 58.9
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 4.9e-103 378.6 338 56.5
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.8e-100 370.2 330 53.6
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 3.0e-100 369.4 296 59.1
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 1.1e-99 367.5 305 57.7
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.7e-98 362.5 298 59.4
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 1.0e-92 344.4 272 62.1
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 3.9e-92 342.4 253 69.6
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 1.5e-91 340.5 295 58.3
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 2.8e-90 336.3 290 55.2
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 3.1e-89 332.8 309 52.4
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.5e-83 313.9 297 54.5
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 2.8e-82 309.7 312 56.1
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 3.1e-81 306.2 304 50.0
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 5.1e-76 288.9 372 42.7
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.7e-74 283.9 297 45.8
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 5.9e-72 275.4 296 44.6
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 5.0e-71 272.3 299 45.2
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 3.2e-70 269.6 316 49.1
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 4.7e-69 265.8 298 42.6
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.9e-68 262.7 200 64.5
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.7e-63 247.3 163 69.9
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 6.5e-63 245.4 202 61.9
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 4.2e-62 242.7 265 44.5
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 4.0e-52 209.5 173 56.6
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 2.8e-50 203.4 229 47.6
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 3.5e-40 169.9 283 33.9
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 3.0e-36 156.8 84 84.5
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 6.8e-36 155.6 115 72.2
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 8.3e-34 148.7 118 55.1
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.6e-32 144.4 140 54.3
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 2.0e-27 127.5 102 61.8
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 3.4e-27 126.7 73 78.1
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 9.8e-27 125.2 92 60.9
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 9.8e-27 125.2 92 60.9
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.1e-25 121.7 68 77.9
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.9e-25 120.9 120 51.7
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 1.3e-23 114.8 70 74.3
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 6.6e-23 112.5 87 57.5
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 1.1e-22 111.7 118 49.2
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 4.7e-21 106.3 88 54.5
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 3.7e-18 96.7 177 36.2
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 3.9e-15 86.7 58 69.0
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 5.1e-15 86.3 63 61.9
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 1.1e-14 85.1 52 71.2
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.2e-13 81.6 85 52.9
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 6.4e-10 69.3 47 66.0
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.9e-09 67.8 62 50.0
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 4.1e-09 66.6 91 37.4
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 5.4e-09 66.2 51 56.9


User provided reference genes

Program Settings