Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 9.9e-186 653.3 324 100.0
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 2.7e-183 645.2 324 98.5
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 3.0e-166 588.6 324 90.4
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 3.8e-161 571.6 325 87.7
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 7.4e-157 557.4 299 93.0
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 6.9e-155 550.8 335 82.1
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 1.4e-118 430.3 325 64.0
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 5.3e-115 418.3 326 64.4
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 7.0e-115 417.9 323 65.3
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 5.0e-113 411.8 326 64.4
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 1.5e-112 410.2 323 63.5
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 3.2e-112 409.1 325 63.1
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 6.8e-110 401.4 325 64.0
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 8.8e-110 401.0 325 62.8
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 8.8e-110 401.0 325 62.8
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.2e-109 400.6 325 62.8
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 4.4e-109 398.7 325 62.5
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.7e-108 396.7 329 62.6
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 3.7e-108 395.6 325 59.7
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 8.3e-108 394.4 324 61.7
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.4e-107 393.7 328 63.1
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 1.8e-107 393.3 325 61.2
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 1.8e-107 393.3 339 61.1
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.7e-106 389.4 325 61.5
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 1.0e-105 387.5 323 61.6
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 1.0e-105 387.5 329 59.3
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 1.3e-105 387.1 325 61.2
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 2.9e-105 386.0 327 58.4
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 2.9e-105 386.0 325 59.7
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.8e-105 385.6 326 60.4
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 2.5e-104 382.9 325 59.1
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 3.2e-104 382.5 288 66.0
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 7.2e-104 381.3 325 60.0
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 3.6e-103 379.0 334 58.1
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 2.3e-102 376.3 326 60.7
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 3.0e-102 375.9 331 58.6
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 4.0e-102 375.6 328 58.2
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 5.2e-102 375.2 318 64.5
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 5.2e-102 375.2 325 59.7
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 2.6e-101 372.9 326 59.2
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 4.4e-101 372.1 326 59.2
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 1.7e-100 370.2 327 59.0
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 2.8e-100 369.4 328 59.5
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 3.7e-100 369.0 326 59.8
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 4.8e-100 368.6 327 58.1
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 8.3e-100 367.9 325 57.2
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 8.3e-100 367.9 325 57.8
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 1.4e-99 367.1 330 57.9
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 4.1e-99 365.5 326 57.7
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 9.1e-99 364.4 325 57.5
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 3.5e-98 362.5 303 60.1
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 7.7e-98 361.3 323 57.0
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 1.7e-97 360.1 281 64.4
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 2.3e-97 359.8 325 56.3
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 2.3e-97 359.8 332 56.9
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 8.6e-97 357.8 326 56.7
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.1e-96 357.5 329 56.8
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 9.5e-96 354.4 326 56.7
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 9.5e-96 354.4 328 56.1
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 6.1e-95 351.7 328 55.5
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 8.0e-95 351.3 326 54.6
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 8.0e-95 351.3 323 58.2
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 3.0e-94 349.4 294 61.6
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 2.6e-93 346.3 326 54.3
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 7.5e-93 344.7 333 54.1
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 1.3e-92 344.0 333 54.1
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 1.3e-92 344.0 354 51.4
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 6.3e-92 341.7 326 54.0
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 1.8e-91 340.1 273 58.6
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 2.4e-91 339.7 331 53.8
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 5.4e-91 338.6 288 61.8
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 1.2e-90 337.4 325 52.6
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.6e-90 337.0 315 54.3
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 3.5e-90 335.9 328 53.4
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 5.9e-90 335.1 326 53.7
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 7.8e-90 334.7 330 55.2
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 1.3e-89 334.0 342 53.8
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 1.7e-89 333.6 331 54.7
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 2.9e-89 332.8 331 54.4
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 3.9e-89 332.4 294 59.9
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 9.5e-88 327.8 289 58.5
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 2.1e-87 326.6 340 53.5
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 8.9e-86 321.2 218 71.6
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 4.4e-85 318.9 288 57.3
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 4.9e-84 315.5 249 63.9
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 1.1e-83 314.3 329 52.3
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 1.0e-81 307.8 297 54.5
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.3e-81 307.4 289 56.4
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.9e-80 303.5 294 53.4
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.3e-80 302.8 323 50.8
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.7e-79 298.9 317 51.1
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 8.0e-79 298.1 320 49.1
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.4e-77 292.4 324 50.0
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 2.2e-76 290.0 342 48.2
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 4.9e-76 288.9 342 47.4
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 1.9e-75 287.0 342 47.1
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 1.2e-74 284.3 347 45.2
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 3.9e-73 279.3 229 60.3
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 1.9e-72 276.9 357 46.2
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 1.1e-70 271.2 314 49.7
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 2.3e-70 270.0 259 55.6
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 4.0e-70 269.2 356 43.3
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 2.0e-69 266.9 325 47.7
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 4.1e-67 259.2 357 43.7
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 1.3e-65 254.2 325 45.5
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 5.1e-65 252.3 277 49.5
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 9.6e-64 248.1 277 50.2
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 6.2e-63 245.4 172 69.8
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 1.1e-62 244.6 242 49.2
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 5.2e-62 242.3 295 43.4
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 4.4e-61 239.2 212 61.3
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.3e-60 237.7 231 56.3
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.3e-60 237.7 231 56.3
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 3.8e-60 236.1 325 41.2
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 6.4e-60 235.3 214 54.7
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 1.4e-59 234.2 290 41.4
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.5e-58 229.6 291 45.7
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 7.8e-58 228.4 323 43.0
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 3.0e-57 226.5 209 56.5
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.4e-51 205.7 243 45.7
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 7.8e-50 201.8 218 46.3
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 7.8e-50 201.8 214 51.9
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 4.8e-47 192.6 248 46.8
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 6.9e-46 188.7 121 70.2
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 2.9e-44 183.3 175 52.6
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 2.9e-44 183.3 179 54.2
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 7.1e-43 178.7 158 57.0
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 1.9e-40 170.6 150 57.3
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 2.5e-40 170.2 159 56.0
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 2.4e-38 163.7 130 62.3
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 1.5e-37 161.0 248 36.7
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.6e-37 160.2 276 37.3
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 5.1e-33 146.0 148 51.4
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.9e-32 144.1 154 52.6
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 3.3e-32 143.3 158 47.5
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 2.1e-31 140.6 282 30.9
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 1.7e-28 131.0 79 75.9
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.4e-27 127.9 200 40.5
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 1.6e-26 124.4 175 45.1
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 5.7e-24 115.9 70 71.4
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 1.1e-16 91.7 183 29.5
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.8e-14 84.3 60 68.3
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 5.7e-08 62.8 90 41.1
Peaxi162Scf00376g00009 Petunia axillaris HOM05D005212 ORTHO05D006353 9.7e-08 62.0 31 83.9
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 2.8e-07 60.5 50 46.0
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 8.2e-07 58.9 189 27.5


User provided reference genes

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