Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 8.1e-152 540.8 366 100.0
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.3e-138 496.9 366 94.8
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.5e-129 466.8 366 90.4
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 7.1e-124 448.0 365 87.9
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 3.5e-123 445.7 391 83.4
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 7.9e-123 444.5 367 81.7
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.3e-98 364.0 366 69.4
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 5.7e-97 358.6 371 66.3
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 7.4e-97 358.2 366 70.5
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 1.2e-94 350.9 367 69.2
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.5e-94 350.5 191 93.7
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 3.5e-78 296.2 366 49.7
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 1.2e-62 244.6 371 44.5
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 5.0e-61 239.2 376 43.1
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 1.5e-60 237.7 371 43.1
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 1.6e-59 234.2 364 42.9
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.2e-57 228.0 373 41.6
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 4.9e-56 222.6 372 40.3
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 2.4e-55 220.3 371 41.5
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 2.3e-53 213.8 376 37.8
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 5.0e-53 212.6 371 39.6
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 5.0e-53 212.6 376 39.9
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.1e-52 211.5 374 39.6
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 4.3e-52 209.5 386 38.9
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 7.3e-52 208.8 370 41.1
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.2e-51 208.0 372 39.0
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 1.6e-51 207.6 372 40.3
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 4.7e-51 206.1 401 38.9
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 6.1e-51 205.7 394 49.7
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 4.0e-50 203.0 361 38.0
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 8.9e-50 201.8 375 37.6
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 2.0e-49 200.7 353 38.5
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 2.6e-49 200.3 372 40.6
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 4.4e-49 199.5 370 36.2
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 4.4e-49 199.5 371 36.1
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 7.5e-49 198.7 372 37.6
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 9.8e-49 198.4 376 39.4
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 1.3e-48 198.0 369 38.2
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.3e-48 198.0 372 38.2
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 2.2e-48 197.2 385 37.1
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 6.4e-48 195.7 357 39.8
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 1.2e-46 191.4 114 83.3
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 4.6e-46 189.5 371 37.7
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 5.9e-46 189.1 384 35.9
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 1.7e-45 187.6 372 37.1
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 3.0e-45 186.8 372 36.0
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.9e-45 186.4 250 63.2
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 6.6e-45 185.7 387 37.0
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.1e-44 184.9 355 35.8
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 1.1e-44 184.9 360 36.4
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.9e-44 184.1 353 35.7
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 1.9e-44 184.1 371 36.1
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 2.5e-44 183.7 378 35.7
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 4.3e-44 183.0 355 35.5
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 4.3e-44 183.0 376 35.9
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 7.3e-44 182.2 355 35.8
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 6.2e-43 179.1 349 36.4
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.8e-42 177.6 155 56.1
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 1.8e-42 177.6 372 37.1
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 5.2e-42 176.0 370 36.8
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.8e-42 175.6 350 34.0
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 1.2e-41 174.9 371 47.4
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.5e-41 174.5 173 56.6
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.5e-41 174.5 173 56.6
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 4.4e-41 172.9 382 33.8
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 4.4e-41 172.9 374 36.4
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 4.4e-41 172.9 350 32.9
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.4e-41 172.9 363 34.2
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 4.4e-41 172.9 145 60.0
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 5.8e-41 172.6 385 35.8
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 7.5e-41 172.2 371 35.6
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 1.3e-40 171.4 381 39.1
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.3e-40 171.4 369 34.4
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 1.7e-40 171.0 179 50.8
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 2.2e-40 170.6 367 35.4
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 2.9e-40 170.2 365 37.0
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 4.9e-40 169.5 174 51.7
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 6.4e-40 169.1 379 36.7
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 8.3e-40 168.7 371 36.7
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 8.3e-40 168.7 181 49.2
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 2.4e-39 167.2 360 35.3
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.2e-39 166.8 90 93.3
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 4.1e-39 166.4 381 42.5
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 4.1e-39 166.4 378 33.9
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 9.2e-39 165.2 171 51.5
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 3.5e-38 163.3 370 32.7
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 4.6e-38 162.9 375 39.7
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 7.8e-38 162.2 360 34.4
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 7.8e-38 162.2 354 43.2
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 1.0e-37 161.8 383 34.5
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 1.3e-37 161.4 367 33.5
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 3.9e-37 159.8 370 36.5
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 3.9e-37 159.8 368 32.6
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 8.6e-37 158.7 369 33.1
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 1.9e-36 157.5 372 32.5
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 2.5e-36 157.1 353 33.1
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 2.5e-36 157.1 170 48.8
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 3.3e-36 156.8 370 33.2
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 2.8e-35 153.7 349 32.4
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 2.8e-35 153.7 182 45.6
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 1.1e-34 151.8 171 48.5
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.1e-34 151.8 174 47.7
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 1.8e-34 151.0 352 33.2
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 2.3e-34 150.6 191 46.1
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.2e-34 149.4 159 50.9
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 8.9e-34 148.7 151 51.0
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 8.9e-34 148.7 151 51.0
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.2e-33 148.3 350 31.1
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 1.5e-33 147.9 209 42.1
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 2.6e-33 147.1 142 47.9
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 4.4e-33 146.4 384 32.8
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 5.8e-33 146.0 178 47.2
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 9.8e-33 145.2 184 44.0
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 1.7e-32 144.4 169 46.2
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 2.2e-32 144.1 158 48.7
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 2.9e-32 143.7 146 52.7
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 3.7e-32 143.3 148 50.0
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 3.7e-32 143.3 148 50.0
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 4.9e-32 142.9 158 47.5
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 4.9e-32 142.9 158 47.5
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 8.3e-32 142.1 126 55.6
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 8.3e-32 142.1 142 47.9
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 2.4e-31 140.6 177 44.6
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 4.1e-31 139.8 148 48.6
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.7e-30 137.1 358 33.5
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 3.5e-30 136.7 156 44.9
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 1.0e-29 135.2 128 50.8
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 3.9e-29 133.3 289 34.9
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 5.1e-29 132.9 147 48.3
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 6.6e-29 132.5 349 30.4
Nitab4.5_0001315g0090 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.5e-28 130.6 211 64.9
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 2.5e-28 130.6 157 44.6
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 3.3e-28 130.2 175 42.9
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 3.3e-28 130.2 175 42.9
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 4.3e-28 129.8 155 43.2
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 5.6e-28 129.4 138 46.4
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 2.1e-27 127.5 313 33.5
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 8.1e-27 125.6 141 43.3
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 2.3e-26 124.0 141 47.5
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 2.9e-24 117.1 153 39.9
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 3.8e-24 116.7 279 44.1
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 4.9e-24 116.3 129 43.4
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 6.4e-24 115.9 149 43.0
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 4.1e-23 113.2 369 42.8
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.1e-22 110.9 254 33.9
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.6e-22 109.8 120 46.7
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 6.0e-22 109.4 133 43.6
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 8.6e-21 105.5 89 53.9
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.1e-20 105.1 141 41.8
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 7.3e-20 102.4 303 30.4
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 1.5e-17 94.7 83 61.4
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 2.6e-17 94.0 185 35.7
CAN.G774.36 Capsicum annuum HOM05D004296 ORTHO05D005045 3.4e-17 93.6 81 69.1
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 4.9e-16 89.7 264 45.1
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 8.4e-16 89.0 328 26.2
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 3.5e-14 83.6 94 45.7
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 4.6e-14 83.2 157 39.5
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 6.0e-14 82.8 113 41.6
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 1.6e-11 74.7 55 60.0
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 1.1e-10 72.0 79 45.6
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 6.9e-10 69.3 59 47.5
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 6.9e-10 69.3 101 40.6
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 2.9e-08 63.9 121 30.6
Sabra01G0079000 Salix brachista HOM05D004296 ORTHO05D005045 3.2e-07 60.5 119 37.0
Cpa.g.sc39.98 Carica papaya HOM05D004296 ORTHO05D005045 1.6e-06 58.2 74 45.9
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 4.6e-06 56.6 161 30.4


User provided reference genes

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