Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 5.4e-151 537.7 290 100.0
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 5.6e-148 527.7 290 97.9
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 7.6e-137 490.7 300 90.7
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 3.8e-104 382.1 343 64.7
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 5.3e-98 361.7 341 63.6
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.1e-95 354.0 342 62.3
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 3.6e-62 242.7 333 46.2
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 2.8e-59 233.0 339 48.4
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 4.1e-58 229.2 347 41.8
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 3.5e-57 226.1 313 49.8
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 6.1e-54 215.3 322 47.8
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 6.1e-54 215.3 322 47.8
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 4.4e-52 209.1 379 38.3
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 9.8e-52 208.0 315 44.8
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 9.8e-52 208.0 315 44.8
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 8.3e-51 204.9 325 46.8
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.8e-50 203.8 377 42.7
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 5.4e-50 202.2 319 40.8
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 7.8e-49 198.4 352 41.8
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 1.0e-48 198.0 382 37.2
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.7e-48 197.2 391 40.4
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 8.6e-48 194.9 389 39.8
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.1e-47 194.5 384 41.4
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 3.3e-47 193.0 349 44.4
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 3.3e-47 193.0 362 39.2
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 4.3e-47 192.6 383 41.0
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 5.6e-47 192.2 383 41.5
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 5.6e-47 192.2 335 49.0
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 9.5e-47 191.4 383 40.7
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 9.5e-47 191.4 383 40.7
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 1.2e-46 191.0 374 42.0
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 3.6e-46 189.5 380 38.2
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 3.6e-46 189.5 369 41.7
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 8.0e-46 188.3 383 36.6
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 1.8e-45 187.2 341 46.6
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 1.8e-45 187.2 402 38.6
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 2.3e-45 186.8 407 36.6
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 4.0e-45 186.0 366 42.6
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 4.0e-45 186.0 366 39.6
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 8.9e-45 184.9 373 38.1
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.0e-44 183.7 400 40.5
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 2.0e-44 183.7 389 40.1
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 3.7e-43 179.5 373 37.3
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 1.1e-42 177.9 386 38.9
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.1e-42 177.9 217 54.8
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 1.1e-42 177.9 334 38.0
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 1.4e-42 177.6 389 34.7
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.4e-42 177.6 363 36.1
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.9e-42 177.2 356 36.2
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.4e-42 176.8 345 42.3
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 4.1e-42 176.0 318 36.8
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 5.4e-42 175.6 269 42.8
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 7.0e-42 175.3 303 39.9
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 9.2e-42 174.9 327 39.4
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 1.2e-41 174.5 366 37.7
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.0e-41 173.7 387 37.2
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.0e-41 173.7 346 41.9
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 2.0e-41 173.7 379 36.9
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 3.5e-41 172.9 369 39.3
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 4.6e-41 172.6 332 44.6
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 4.6e-41 172.6 332 44.6
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 4.6e-41 172.6 297 41.8
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 6.0e-41 172.2 363 40.8
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.0e-40 171.4 386 37.8
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 1.3e-40 171.0 389 38.6
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.3e-40 171.0 394 36.5
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 1.7e-40 170.6 384 36.7
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 1.7e-40 170.6 384 36.7
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 1.7e-40 170.6 395 36.5
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.7e-40 170.6 395 36.5
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 1.7e-40 170.6 392 36.7
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 2.3e-40 170.2 393 35.6
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.9e-40 169.5 394 36.5
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 1.9e-39 167.2 317 43.2
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 3.6e-38 162.9 312 39.4
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 8.1e-38 161.8 334 38.9
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.1e-37 161.4 335 38.8
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 3.1e-37 159.8 248 43.1
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 2.6e-36 156.8 376 37.5
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 9.8e-36 154.8 241 47.7
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 8.3e-35 151.8 374 38.8
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.7e-33 146.7 347 33.4
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.7e-33 146.7 347 33.4
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 6.0e-33 145.6 347 33.7
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.3e-32 143.7 368 38.0
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.3e-32 143.7 368 38.0
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 2.3e-32 143.7 344 34.9
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 3.9e-32 142.9 235 45.5
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 1.1e-31 141.4 407 35.1
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 1.5e-31 141.0 323 36.5
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 1.9e-31 140.6 365 37.8
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.6e-30 137.5 350 32.0
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 1.6e-30 137.5 302 34.1
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 2.8e-30 136.7 345 33.3
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 3.6e-30 136.3 246 45.9
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 4.7e-30 136.0 250 44.0
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 4.0e-29 132.9 346 37.3
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 4.0e-29 132.9 364 37.4
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 8.9e-29 131.7 368 38.6
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 7.6e-28 128.6 328 36.3
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 9.9e-28 128.3 381 34.6
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 1.3e-27 127.9 325 32.3
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 2.9e-27 126.7 405 30.1
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 3.8e-27 126.3 232 43.1
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 8.4e-27 125.2 344 39.5
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 8.4e-27 125.2 183 49.7
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 1.1e-26 124.8 220 40.9
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.1e-26 124.8 232 43.1
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.1e-26 124.8 357 35.3
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 1.1e-26 124.8 235 45.1
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 1.9e-26 124.0 237 40.9
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 1.9e-26 124.0 210 45.7
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 2.4e-26 123.6 328 35.7
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 2.4e-26 123.6 328 35.7
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 5.4e-26 122.5 419 33.2
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 2.7e-25 120.2 339 32.4
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 1.7e-24 117.5 235 39.6
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.7e-24 117.5 246 39.4
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 2.3e-24 117.1 216 42.6
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 3.9e-24 116.3 404 29.5
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 1.9e-23 114.0 229 38.4
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 3.3e-23 113.2 229 42.8
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 3.3e-23 113.2 229 42.8
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 9.6e-23 111.7 223 36.8
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 1.2e-22 111.3 371 32.1
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.6e-22 110.9 226 37.2
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 2.1e-22 110.5 413 27.8
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 2.8e-22 110.2 386 31.3
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 6.2e-22 109.0 209 37.3
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 6.2e-22 109.0 306 32.7
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 1.1e-21 108.2 204 39.7
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 2.0e-20 104.0 317 32.5
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 2.6e-20 103.6 231 36.4
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 2.6e-20 103.6 231 36.4
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 2.6e-20 103.6 231 36.4
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 5.8e-20 102.4 222 34.7
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 2.2e-19 100.5 346 28.0
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 2.2e-19 100.5 291 33.7
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 3.8e-19 99.8 260 30.0
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 2.1e-17 94.0 246 41.1
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 5.1e-16 89.4 239 37.7
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 1.5e-15 87.8 229 40.6
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 3.3e-15 86.7 221 33.9
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 3.3e-15 86.7 207 33.3
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.3e-14 84.7 115 43.5
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 5.8e-12 75.9 236 38.1
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 7.6e-12 75.5 93 57.0
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 9.3e-10 68.6 164 32.9
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 2.1e-09 67.4 241 28.6
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 5.1e-08 62.8 229 31.4
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 2.8e-06 57.0 372 25.8
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 3.7e-06 56.6 146 35.6
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 3.7e-06 56.6 114 36.8


User provided reference genes

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