Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 3.8e-157 558.1 286 100.0
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.0e-146 523.5 274 97.4
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 1.1e-143 513.5 287 92.0
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.8e-135 486.1 297 87.2
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 2.3e-117 426.0 275 77.8
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 3.0e-117 425.6 281 75.8
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 1.5e-116 423.3 276 78.6
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 1.2e-115 420.2 283 74.9
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.2e-115 420.2 284 74.3
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 2.1e-115 419.5 279 74.9
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 1.0e-114 417.2 276 76.1
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 1.8e-114 416.4 274 75.9
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 1.8e-114 416.4 270 77.8
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 3.1e-114 415.6 280 75.4
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 8.9e-114 414.1 273 76.9
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.2e-113 413.7 272 76.8
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 1.2e-113 413.7 282 76.2
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 2.0e-113 412.9 279 73.5
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 2.6e-113 412.5 276 74.6
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 3.4e-113 412.1 277 75.5
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 3.4e-113 412.1 285 73.7
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 3.4e-113 412.1 277 76.9
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 5.8e-113 411.4 275 74.9
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.3e-112 410.2 259 79.9
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 3.7e-112 408.7 286 73.1
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 4.9e-112 408.3 275 75.3
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 6.4e-112 407.9 272 75.4
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 1.1e-111 407.1 279 74.2
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 1.4e-111 406.8 278 76.3
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 2.4e-111 406.0 282 74.1
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 5.4e-111 404.8 280 75.0
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 9.2e-111 404.1 242 82.2
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 9.2e-111 404.1 300 71.3
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 1.2e-110 403.7 315 67.0
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 1.6e-110 403.3 275 76.0
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 3.5e-110 402.1 277 75.1
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 4.6e-110 401.7 274 75.2
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 2.3e-109 399.4 279 74.2
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 2.3e-109 399.4 251 79.7
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 8.6e-109 397.5 276 73.9
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 1.9e-108 396.4 248 78.6
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 2.5e-108 396.0 276 73.6
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 2.5e-108 396.0 283 73.9
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 2.5e-108 396.0 287 70.4
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 5.6e-108 394.8 286 71.0
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 1.2e-107 393.7 268 74.6
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 1.6e-107 393.3 283 72.8
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 1.6e-107 393.3 278 72.7
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 2.1e-107 392.9 282 72.7
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.1e-107 392.9 295 69.2
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 2.1e-107 392.9 251 79.3
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 2.1e-107 392.9 283 73.9
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 2.8e-107 392.5 282 73.0
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 2.8e-107 392.5 275 70.9
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 8.1e-107 391.0 283 72.8
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 1.4e-106 390.2 274 70.8
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 2.3e-106 389.4 284 72.2
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 2.3e-106 389.4 280 72.1
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 6.8e-106 387.9 276 73.2
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 8.9e-106 387.5 276 73.6
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 8.9e-106 387.5 255 75.3
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 8.9e-106 387.5 294 68.7
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 2.0e-105 386.3 197 98.5
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 2.6e-105 386.0 238 80.7
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 2.6e-105 386.0 261 74.3
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 3.4e-105 385.6 257 74.7
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 3.4e-105 385.6 279 69.2
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 7.5e-105 384.4 257 74.7
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 1.3e-104 383.6 276 72.5
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 4.9e-104 381.7 276 72.5
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 6.4e-104 381.3 277 71.1
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.2e-102 377.1 257 73.9
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 1.2e-102 377.1 279 70.3
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 1.6e-102 376.7 257 74.7
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 2.1e-102 376.3 287 69.7
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 1.3e-101 373.6 257 72.4
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.5e-100 370.2 224 86.2
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 6.2e-99 364.8 280 67.9
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 6.8e-98 361.3 223 78.9
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 8.9e-98 360.9 224 80.4
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 1.2e-97 360.5 273 68.5
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 1.3e-96 357.1 275 69.8
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 8.4e-96 354.4 290 65.9
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 8.4e-96 354.4 241 72.6
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 2.1e-94 349.7 279 68.1
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 3.5e-94 349.0 256 71.9
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 3.5e-94 349.0 246 74.4
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 3.3e-92 342.4 304 59.2
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 3.3e-92 342.4 236 72.9
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 3.3e-92 342.4 234 76.9
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 9.6e-92 340.9 241 70.5
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 2.8e-91 339.3 286 64.0
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 8.1e-91 337.8 224 74.1
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 5.8e-89 331.6 266 67.7
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 1.9e-87 326.6 326 57.7
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 3.5e-86 322.4 276 63.0
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 7.8e-86 321.2 274 63.5
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 4.9e-80 302.0 199 76.9
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 8.4e-80 301.2 196 75.5
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 1.4e-79 300.4 173 81.5
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 1.7e-77 293.5 208 73.1
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 1.7e-77 293.5 277 60.6
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 3.6e-75 285.8 196 70.9
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 1.5e-73 280.4 349 50.4
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.3e-72 277.3 176 77.8
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 2.2e-72 276.6 285 53.3
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 1.9e-60 236.9 225 57.8
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 3.1e-58 229.6 214 51.9
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 9.0e-58 228.0 231 48.9
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 1.5e-57 227.3 244 48.0
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 3.9e-53 212.6 296 48.0
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 2.2e-51 206.8 197 57.9
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.2e-48 196.8 167 58.7
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 7.4e-44 181.8 126 74.6
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 8.2e-43 178.3 259 44.8
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 2.4e-34 150.2 122 69.7
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.5e-33 146.0 92 77.2
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 5.9e-33 145.6 94 80.9
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 2.5e-31 140.2 122 65.6
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 1.3e-27 127.9 122 60.7
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.3e-27 127.9 78 83.3
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 3.8e-24 116.3 142 50.7
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 1.5e-23 114.4 73 82.2
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.4e-21 107.8 170 38.8
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-21 107.5 92 54.3
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 1.5e-20 104.4 301 31.2
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 1.3e-19 101.3 79 67.1
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 6.3e-19 99.0 59 78.0
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 1.5e-15 87.8 110 48.2
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 4.2e-15 86.3 230 28.7
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 9.5e-15 85.1 200 38.0
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 1.2e-14 84.7 200 37.5
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.6e-14 84.3 50 76.0
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 2.1e-14 84.0 89 53.9
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 2.8e-14 83.6 87 57.5
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 8.0e-14 82.0 57 78.9
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 8.0e-14 82.0 57 78.9
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 1.8e-13 80.9 55 69.1
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 2.3e-13 80.5 102 47.1
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 2.6e-12 77.0 49 75.5
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 6.3e-11 72.4 59 52.5
Nitab4.5_0000014g0540 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.8e-10 70.9 51 72.5
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 5.4e-10 69.3 93 45.2
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 1.2e-09 68.2 56 69.6
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.3e-08 63.9 47 66.0
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 2.5e-07 60.5 211 23.2
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 9.5e-07 58.5 216 22.2
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 2.8e-06 57.0 233 24.5


User provided reference genes

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