Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 4.1e-192 674.5 320 100.0
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 3.7e-185 651.4 317 97.2
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.0e-175 619.0 317 91.5
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 4.2e-173 611.3 318 90.9
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.7e-172 607.8 314 91.1
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 4.3e-149 531.6 318 79.9
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 1.3e-145 520.0 316 76.6
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 8.3e-145 517.3 316 74.7
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 1.1e-144 516.9 316 74.4
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 1.2e-143 513.5 321 75.1
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 1.6e-143 513.1 316 74.7
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 3.5e-143 511.9 316 76.6
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 3.5e-143 511.9 316 73.7
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 5.1e-142 508.1 321 75.7
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 8.6e-142 507.3 316 74.4
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 1.1e-141 506.9 320 72.8
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 2.5e-141 505.8 317 74.4
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 5.6e-141 504.6 316 74.4
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.1e-140 502.7 319 71.8
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 4.7e-140 501.5 316 73.7
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 4.7e-140 501.5 316 72.8
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 4.7e-140 501.5 316 73.4
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 6.2e-140 501.1 317 72.6
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 8.1e-140 500.7 368 66.3
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 1.1e-139 500.4 321 71.0
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 1.1e-139 500.4 317 75.1
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 1.8e-139 499.6 317 73.5
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 2.3e-139 499.2 319 71.8
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 2.3e-139 499.2 317 74.1
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 2.3e-139 499.2 316 71.8
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 4.0e-139 498.4 316 71.5
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.8e-139 497.7 319 71.5
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 5.8e-138 494.6 317 71.6
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 1.3e-137 493.4 318 70.4
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 1.7e-137 493.0 318 71.7
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 2.2e-137 492.7 316 71.8
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 2.9e-137 492.3 303 74.6
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 3.8e-137 491.9 321 70.7
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 3.8e-137 491.9 316 72.8
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 4.9e-137 491.5 318 72.6
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 4.9e-137 491.5 369 64.0
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 4.9e-137 491.5 317 71.9
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 9.2e-136 487.3 316 72.2
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 9.2e-136 487.3 316 69.9
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 1.2e-135 486.9 316 72.5
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.2e-135 486.9 316 70.6
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 2.1e-135 486.1 316 72.5
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 2.7e-135 485.7 316 70.6
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 2.7e-135 485.7 316 70.3
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 6.0e-135 484.6 316 72.2
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 6.0e-135 484.6 317 72.6
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 6.0e-135 484.6 316 71.8
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 7.8e-135 484.2 316 71.5
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 7.8e-135 484.2 316 69.6
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 1.0e-134 483.8 316 71.8
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.0e-134 483.8 316 71.5
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 1.0e-134 483.8 316 71.5
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.3e-134 483.4 316 69.9
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 2.3e-134 482.6 316 70.6
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 3.0e-134 482.3 318 72.0
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 3.0e-134 482.3 316 69.9
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 5.1e-134 481.5 316 69.6
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 5.1e-134 481.5 316 70.3
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 6.6e-134 481.1 316 69.9
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 1.1e-133 480.3 316 69.6
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 1.9e-133 479.6 316 70.6
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.9e-133 479.6 316 69.9
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 5.6e-133 478.0 316 72.8
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 7.3e-133 477.6 338 67.2
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 1.2e-132 476.9 313 70.9
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 2.1e-132 476.1 320 68.4
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 3.6e-132 475.3 320 70.6
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 4.7e-132 474.9 316 69.6
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 8.1e-132 474.2 316 69.3
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 8.1e-132 474.2 316 69.6
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 1.4e-131 473.4 316 69.3
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 1.8e-131 473.0 316 68.7
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 2.4e-131 472.6 316 69.0
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 3.1e-131 472.2 331 65.9
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 3.1e-131 472.2 313 68.7
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 5.2e-131 471.5 316 69.6
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 8.9e-131 470.7 316 69.0
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 8.9e-131 470.7 317 69.4
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 2.0e-130 469.5 316 68.7
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 2.6e-130 469.2 316 69.0
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 3.4e-130 468.8 316 69.0
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 3.4e-130 468.8 313 69.3
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 4.4e-130 468.4 316 68.7
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 4.4e-130 468.4 317 69.4
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 4.4e-130 468.4 317 69.1
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 7.6e-130 467.6 316 68.7
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 7.6e-130 467.6 316 68.7
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 9.9e-130 467.2 316 69.0
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 2.2e-129 466.1 316 69.0
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 4.9e-129 464.9 316 67.4
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 8.4e-129 464.2 323 66.6
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 8.4e-129 464.2 317 71.3
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 5.4e-128 461.5 316 67.1
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.2e-127 460.3 316 66.8
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.6e-127 459.9 316 66.8
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 3.5e-127 458.8 318 67.6
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 2.3e-126 456.1 316 67.4
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 3.9e-126 455.3 316 67.7
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 5.1e-126 454.9 312 67.0
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 6.6e-126 454.5 316 69.9
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 8.7e-126 454.1 316 67.7
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 8.7e-126 454.1 316 66.8
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 1.5e-125 453.4 318 66.7
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 7.3e-125 451.1 308 68.8
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.6e-124 449.9 312 66.3
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 3.6e-124 448.7 284 74.3
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 8.1e-124 447.6 391 58.3
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 3.1e-123 445.7 316 66.5
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 4.0e-123 445.3 321 65.1
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 6.9e-123 444.5 316 65.8
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.1e-120 437.2 318 67.9
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 2.4e-120 436.0 338 63.9
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 5.4e-120 434.9 318 65.7
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 7.1e-120 434.5 318 66.7
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 4.6e-119 431.8 292 66.4
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 8.1e-116 421.0 289 66.4
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 9.0e-115 417.5 400 53.0
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.3e-113 413.7 268 71.6
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 7.1e-112 407.9 325 60.0
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 7.9e-111 404.4 337 57.3
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.7e-110 401.4 316 61.1
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 2.8e-108 396.0 290 66.2
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 2.4e-107 392.9 333 58.0
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 7.9e-103 377.9 323 55.4
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.3e-102 377.1 227 74.9
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 2.3e-102 376.3 321 58.6
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 8.7e-102 374.4 302 60.6
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 3.3e-101 372.5 318 56.9
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.6e-100 370.2 318 55.0
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 7.9e-95 351.3 316 53.8
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 1.8e-94 350.1 225 71.1
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 8.7e-94 347.8 243 68.7
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 4.3e-93 345.5 292 58.2
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 6.9e-91 338.2 354 47.2
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 8.5e-81 304.7 200 69.5
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 2.5e-80 303.1 144 98.6
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 5.2e-78 295.4 218 64.2
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 1.3e-76 290.8 185 72.4
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 3.5e-74 282.7 183 72.7
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 4.5e-66 255.8 165 70.9
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 3.8e-65 252.7 187 64.7
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.0e-61 240.4 305 45.9
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 2.4e-59 233.4 151 72.2
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 2.0e-58 230.3 146 74.7
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 6.1e-47 192.2 147 60.5
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 3.0e-41 173.3 130 65.4
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 1.5e-37 161.0 99 70.7
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 6.4e-36 155.6 124 58.9
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 5.4e-35 152.5 110 64.5
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 4.0e-30 136.3 90 72.2
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 5.2e-30 136.0 92 66.3
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 2.6e-29 133.7 105 62.9
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 4.4e-29 132.9 75 76.0
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 5.8e-29 132.5 69 82.6
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 1.1e-22 111.7 90 55.6
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 3.1e-22 110.2 67 68.7
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 7.6e-21 105.5 74 62.2
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 4.9e-20 102.8 58 74.1
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 4.1e-19 99.8 169 35.5
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 2.7e-18 97.1 71 62.0
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 3.8e-12 76.6 43 76.7
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 2.7e-10 70.5 55 60.0
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.3e-09 68.2 80 50.0
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 4.8e-07 59.7 56 51.8


User provided reference genes

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